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Series GSE18824 Query DataSets for GSE18824
Status Public on Dec 31, 2009
Title Expression data from 17 day old testes of wild type and UBR2-/- mice
Organism Mus musculus
Experiment type Expression profiling by array
Summary Ubiquitylation of histones provides an important mechanism regulating chromatin remodeling and gene expression. Recent studies have revealed ubiquitin ligases involved in histone ubiquitylation, yet the responsible enzymes and the function of histone ubiquitination in spermatogenesis remain unclear. Here we show that the ubiquitin ligase UBR2, one of the recognition E3 components of the N-end rule proteolytic pathway, localizes to meiotic chromatin regions, including unsynapsed axial elements linked to chromatin inactivation, and mediates, in combination with the ubiquitin-conjugating enzyme HR6B, the ubiquitination of histone H2A. UBR2 interacts with HR6B and H2A and promotes the HR6B-H2A interaction and the HR6B-to-H2A transfer of ubiquitin. UBR2 and ubiquitinated H2A (uH2A) spatiotemporally mark meiotic chromatin regions subject to transcriptional silencing, and UBR2-deficient spermatocytes fail to induce the ubiquitination of H2A during meiosis. UBR2-deficient spermatocytes are profoundly impaired in transcriptional silencing of genes linked to unsynapsed axes of the X and Y chromosomes. We propose a model, in which UBR2 on axial elements of the X-Y pair enables HR6B on the linked chromatin domain to repeat histone ubiquitination cycles while scanning a string of nucleosomes. Our results suggest that histone ubiquitination in germ cells may be mediated by E3-E2 pairs distinct from those in somatic cells, providing a new insight into chromatin remodeling and gene expression regulation.
 
Overall design For each genotype, 2 testes were collected from different individual in same litter at 17 days old. Biotinylated cRNA was produced and hybridized on Affimetrix mouse genome 430A 2.0 array.
 
Contributor(s) An J, Kwon Y
Citation(s) 20080676
Submission date Oct 30, 2009
Last update date May 04, 2018
Contact name Jee Young An
E-mail(s) jea9@pitt.edu
Organization name University of Pittsburgh
Street address 3501 Terrace St. Salk 647D
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platforms (1)
GPL8321 [Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array
Samples (2)
GSM466726 Wild type testes
GSM466727 UBR2-/- testes
Relations
BioProject PRJNA121153

Signal Log Ratio header descriptions
ID_REF
WT vs UBR2-/- Signal Log Ratio
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF WT vs UBR2-/- Signal Log Ratio ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 0.3 I 0.001768
AFFX-BioB-M_at 0.5 I 0
AFFX-BioB-3_at 0.4 I 0.000002
AFFX-BioC-5_at 0.4 I 0
AFFX-BioC-3_at 0.4 I 0
AFFX-BioDn-5_at 0.3 I 0.000013
AFFX-BioDn-3_at 0.5 I 0.000008
AFFX-CreX-5_at 0.4 I 0.000001
AFFX-CreX-3_at 0.4 I 0.000002
AFFX-DapX-5_at 0.5 I 0.000166
AFFX-DapX-M_at 0.4 I 0.000336
AFFX-DapX-3_at 0.4 I 0.000599
AFFX-LysX-5_at 0.2 NC 0.198553
AFFX-LysX-M_at 0.5 I 0
AFFX-LysX-3_at 0.4 I 0.000048
AFFX-PheX-5_at 0.5 I 0
AFFX-PheX-M_at 0.4 I 0.000004
AFFX-PheX-3_at 0.4 I 0.000009
AFFX-ThrX-5_at 0.2 NC 0.046463
AFFX-ThrX-M_at 0.3 NC 0.006695

Total number of rows: 22690

Table truncated, full table size 573 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE18824_RAW.tar 3.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
Processed data are available on Series record

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