|
| Status |
Public on Nov 08, 2021 |
| Title |
Base-resolution DNA methylation maps of purple sea urchin (Strongylocentrotus purpuratus) |
| Organism |
Strongylocentrotus purpuratus |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Using MethylC-seq we investigated single-base resolution methylomes of sea urchin during development.
|
| |
|
| Overall design |
MethylC-seq was performed on (i) 24 hpf, 48 hpf, 72 hpf embryos and adult tissue (tube feet) of purple sea urchin in biological replicates.
|
| |
|
| Contributor(s) |
Skvortsova K, Bogdanovic O |
| Citation(s) |
36459547 |
| Submission date |
Nov 06, 2021 |
| Last update date |
Mar 20, 2024 |
| Contact name |
Ksenia Skvortsova |
| E-mail(s) |
k.skvortsova@garvan.org.au
|
| Phone |
478135210
|
| Organization name |
Garvan Institute
|
| Department |
Genomics and Epigenetics
|
| Lab |
Developmental Epigenomics
|
| Street address |
384 Victoria St, Darlinghurst
|
| City |
Sydney |
| State/province |
NSW |
| ZIP/Postal code |
2010 |
| Country |
Australia |
| |
|
| Platforms (1) |
| GPL30935 |
HiSeq X Ten (Strongylocentrotus purpuratus) |
|
| Samples (8)
|
| GSM5677940 |
seaurchin_adult_tubefeet_MethylCseq_rep1 |
| GSM5677941 |
seaurchin_24hpf_embryo_MethylCseq_rep2 |
| GSM5677942 |
seaurchin_48hpf_embryo_MethylCseq_rep2 |
| GSM5677943 |
seaurchin_72hpf_embryo_MethylCseq_rep2 |
| GSM5677944 |
seaurchin_adult_tubefeet_MethylCseq_rep2 |
|
| This SubSeries is part of SuperSeries: |
| GSE188334 |
Base-resolution 5-hydroxymethylcytosine maps of sea urchin and lancelet embryos and adult tissues |
|
| Relations |
| BioProject |
PRJNA778394 |
| SRA |
SRP344880 |
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