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Series GSE188334 Query DataSets for GSE188334
Status Public on Nov 08, 2021
Title Base-resolution 5-hydroxymethylcytosine maps of sea urchin and lancelet embryos and adult tissues
Organisms Strongylocentrotus purpuratus; Branchiostoma lanceolatum; Danio rerio
Experiment type Methylation profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 36459547
Submission date Nov 06, 2021
Last update date Mar 20, 2024
Contact name Ksenia Skvortsova
E-mail(s) k.skvortsova@garvan.org.au
Phone 478135210
Organization name Garvan Institute
Department Genomics and Epigenetics
Lab Developmental Epigenomics
Street address 384 Victoria St, Darlinghurst
City Sydney
State/province NSW
ZIP/Postal code 2010
Country Australia
 
Platforms (5)
GPL23085 HiSeq X Ten (Danio rerio)
GPL25186 HiSeq X Ten (Branchiostoma lanceolatum)
GPL27879 Illumina NovaSeq 6000 (Branchiostoma lanceolatum)
Samples (31)
GSM5677914 seaurchin_24hpf_embryo_ACEseq_rep1
GSM5677915 seaurchin_48hpf_embryo_ACEseq_rep1
GSM5677916 seaurchin_72hpf_embryo_ACEseq_rep1
This SuperSeries is composed of the following SubSeries:
GSE188331 Base-resolution DNA hydroxymethylation maps of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using ACE-seq
GSE188332 DNA hydroxymethylation profiling of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using hMeDIP-seq
GSE188333 Base-resolution DNA methylation maps of purple sea urchin (Strongylocentrotus purpuratus)
Relations
BioProject PRJNA778390

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE188334_RAW.tar 2.4 Gb (http)(custom) TAR (of BED, BW)
SRA Run SelectorHelp
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