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Series GSE18927 Query DataSets for GSE18927
Status Public on Jan 06, 2010
Title University of Washington Human Reference Epigenome Mapping Project
Project Roadmap Epigenomics
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by array
Expression profiling by high throughput sequencing
Summary The NIH Roadmap Epigenomics Mapping Consortium aims to produce a public resource of epigenomic maps for stem cells and primary ex vivo tissues selected to represent the normal counterparts of tissues and organ systems frequently involved in human disease.

Study of chromatin accessibility and expression using exon arrays.


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For data usage terms and conditions, please refer to:
http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies
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Overall design University of Washington Human Reference Epigenome Mapping Project - samples and experiments will continue to be added to this study over the course of the project.

EDACC Genboree Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUniversity%20of%20Washington%2FSTUDY%2FEDACC.1631
Web link http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/geo/roadmap/epigenomics/
 
Contributor(s) Stamatoyannopoulos J
Citation(s) 20944595, 22955618, 22955828, 24336318, 25693567, 26030523, 23576721, 26502339
BioProject PRJNA34535
Submission date Nov 06, 2009
Last update date Mar 24, 2020
Contact name Northwest REMC
E-mail(s) rharris1@bcm.tmc.edu
Organization name University of Washington
Street address -
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platforms (5)
GPL5188 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (758)
GSM468792 Chromatin accessibility assay of IMR90 Cell Line; DS11759
GSM468801 Chromatin accessibility assay of IMR90 Cell Line; DS11764
GSM493384 Chromatin accessibility assay of human CD34 Primary Cells; DS12274
Relations
SRA SRP001371

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE18927_RAW.tar 444.8 Gb (http)(custom) TAR (of BAM, BED, CEL, TXT, WIG)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA
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