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Series GSE18978 Query DataSets for GSE18978
Status Public on Nov 18, 2009
Title Arabidopsis thaliana mutant leaves treated with Pseudomonas syringae ES4326
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary In order to better understand the transcriptional networks triggered by pathogen inoculation, we monitored gene expression in leaves of mutant Arabidopsis plants, inoculated with Pseudomonas syringae ES4326 and wild type Col-0 plants grown in parallel. Individual leaves were injected in the morning using a needle-less syringe with 10E5 cfu cm-2 PsmES4326 (suspended in 5 mM MgSO4). For the wild type, leaves were also mock treated with 5 mM MgSO4. Leaves were harvested 24 hours later. Plants were grown in pots with BM-2 soil (Berger Peat Moss Ltd, Quebec, Canada) at a density of 9 plants per pot and kept at 22 degrees Celsius with 75% humidity and a 12 hour day length.

Keywords: Expression profilling by array
 
Overall design 24 samples were used in this experiment
 
Contributor(s) Mitra R
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 12, 2009
Last update date Aug 15, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) affy@arabidopsis.info
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (24)
GSM469757 Mitra_2-1_coi1-PsmES4326-24hpi_Rep1_ATH1
GSM469758 Mitra_2-2_coi1-PsmES4326-24hpi_Rep2_ATH1
GSM469759 Mitra_2-3_coi1-PsmES4326-24hpi_Rep3_ATH1
Relations
Affiliated with GSE69995
BioProject PRJNA121145

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE18978_RAW.tar 47.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
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