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| Status |
Public on Jul 08, 2022 |
| Title |
MSH1 disruption in plants triggers RdDM-mediated reprogramming of phenotypic plasticity (RNA-Seq) |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To generate epi-lines, two third-generation msh1 T-DNA mutant (SAIL_877_F01) plants were used to pollinate Col-0 to generate two independent F1 populations. Derived F1 progenies were self-pollinated to generate F2 populations that were genotyped for the msh1 T-DNA mutation. MSH1 F2 plants were self-pollinated to produce F3 families that were used in the study.
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| |
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| Overall design |
3 plants from each of the epi populations and Col-0 WT control were sequenced.
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| |
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| Contributor(s) |
Kundariya H, Yang X, Mackenzie S |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Dec 21, 2021 |
| Last update date |
Jul 12, 2022 |
| Contact name |
Hardik Kundariya |
| E-mail(s) |
hsk13@psu.edu
|
| Organization name |
The Pennsylvania State University
|
| Street address |
361 N. Frear
|
| City |
University Park |
| State/province |
PA |
| ZIP/Postal code |
16801 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
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| Samples (27)
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| Relations |
| BioProject |
PRJNA791386 |
| SRA |
SRP351988 |
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