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Series GSE19273 Query DataSets for GSE19273
Status Public on Dec 10, 2009
Title Biological function of Pip3
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Ralstonia solanacearum is the causal agent of bacterial wilt. Arabidopsis thaliana monogenic resistance to the strain GMI1000 is conferred by the RRS1-R gene, present in the resistant ecotype ND-1 and absent in the susceptible ecotype Col-0. The corresponding protein is recognized by the avirulence protein PopP2 of R. solanacearum. In order to identify the plant proteins involved in the PopP2/RRS1-R perception complex, the screening of a root cDNA library in yeast was performed using PopP2 as bait. One interactor found was called Pip3, and we would like to better understand its biological function. Thereby we choose to compare two RNAi lines with their wild type Nd-1 background, and one KO line with its wild type Col-0 background. Also, two overexpressor lines will be compared with their wilt type Nd-1 background and two with their Col-0 background.
 
Overall design 27 samples were used in this experiment.
 
Contributor(s) Marco Y
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Submission date Dec 02, 2009
Last update date Aug 15, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) affy@arabidopsis.info
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (27)
GSM478124 Marco_3-27_KO-Pip3-3_Rep3_ATH1
GSM478125 Marco_3-26_pGli-69-24-3_Rep3_ATH1
GSM478126 Marco_3-25_pGli-69-31-3_Rep3_ATH1
Relations
Affiliated with GSE69995
BioProject PRJNA120951

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE19273_RAW.tar 55.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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