|
| Status |
Public on Dec 31, 2009 |
| Title |
Genome-wide mapping of RNA Pol II binding site (GM12878) |
| Project |
ENCODE
|
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report the results of chromatin immunoprecipitation following by high-thoughput sequencing (ChIP-Seq) using the GA II platform from Illumina for the human RNA Polymerase II in GM12878 cells. We have also generated a sequenced input DNA datasets for GM12878 cells.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| |
|
| Overall design |
Map binding sites of RNA Polymerase II in the genome of GM12878 cells. The GM12878 input data has been deposited in GEO as GSM487430.
|
| Web link |
http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/ENCODE.html
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| |
|
| Contributor(s) |
Raha D, Snyder M |
| Citation(s) |
20139302 |
| BioProject |
PRJNA63447 |
| Submission date |
Dec 17, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Flora Vaccarino |
| Organization name |
Yale University
|
| Department |
Child Study Center
|
| Lab |
Vaccarino
|
| Street address |
230 South Frontage Road
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06520 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9052 |
Illumina Genome Analyzer (Homo sapiens) |
|
| Samples (1) |
|
| This SubSeries is part of SuperSeries: |
| GSE19551 |
Close Association of RNA Polymerase II and Many Transcription Factors With Pol III Genes |
|
| Relations |
| SRA |
SRP001595 |
