|
| Status |
Public on Mar 07, 2022 |
| Title |
Peaksat: An R package for ChIP-seq peak saturation analysis |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ChIP-Seq was performed on naiive cell lines from a Breast Cancer Progression model, including MCF10A, MCF10AT1, and DCIS. Biological replicates (n=2) were performed for all factors across all cell lines described.
|
| |
|
| Overall design |
ChIP-Seq from a breast cancer progression cell model (including MCF10A, MCF10AT1, and DCIS)
|
| |
|
| Contributor(s) |
Boyd J, Gao C, Quinn K, Fritz A, Glass K, Stein G, Frietze S |
| Citation(s) |
36698077 |
| Submission date |
Mar 04, 2022 |
| Last update date |
Feb 08, 2023 |
| Contact name |
Seth Frietze |
| E-mail(s) |
Seth.Frietze@med.uvm.edu
|
| Organization name |
The University of Vermont
|
| Department |
Biomedical and Health Sciences
|
| Street address |
The University of Vermont
|
| City |
Burtlington |
| State/province |
VT |
| ZIP/Postal code |
05405 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18460 |
Illumina HiSeq 1500 (Homo sapiens) |
|
| Samples (12)
|
|
| Relations |
| Reanalysis of |
GSM1700382 |
| Reanalysis of |
GSM1700383 |
| BioProject |
PRJNA812937 |
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