|
| Status |
Public on Feb 04, 2010 |
| Title |
RNA-Seq of melanoma short-term cultures and cell lines |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Identification of RNA-based alterations in melanoma by RNA-Seq, including gene fusions, sequence mutations, and aberrant gene expression levels (to compare to expression level estimates obtained by microarray).
|
| |
|
| Overall design |
melanoma short-term cultures and cell lines were propagated in vitro, and total RNA was extracted for sequencing
|
| |
|
| Contributor(s) |
Berger MF, Garraway LA |
| Citation(s) |
20179022 |
| BioProject |
PRJNA39289 |
| Submission date |
Feb 02, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Michael Berger |
| E-mail(s) |
berger@broadinstitute.org
|
| Organization name |
The Broad Instititute
|
| Department |
Cancer Program
|
| Street address |
7 Cambridge Center
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
|
| Samples (14)
|
|
| This SubSeries is part of SuperSeries: |
| GSE17593 |
Melanoma short-term cultures and cell lines: expression profiling and CNV analyses |
|
| Relations |
| SRA |
SRP000931 |
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