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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 25, 2022 |
| Title |
Effect of depletion of UHRF1, DNMT1, DNMT3B during differentiation |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate gene regulation by UHRF1, DNMT1, DNMT3B in THP-1 cells during differentiation, we established stable knockdown THP-1 cell lines.
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| Overall design |
We then performed gene expression profiling analysis using data obtained from RNA-seq before and after PMA treatment.
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| Contributor(s) |
Park J, Seo S |
| Citation(s) |
37573395 |
| Submission date |
Jun 22, 2022 |
| Last update date |
Feb 19, 2024 |
| Contact name |
Junyoung Park |
| E-mail(s) |
7junika@gmail.com
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| Organization name |
Chung-Ang University
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| Department |
Department of Life Science
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| Street address |
84, Heukseok-ro
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| City |
Seoul |
| ZIP/Postal code |
06974 |
| Country |
South Korea |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (16)
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| GSM6261728 |
THP-1 cells, shNC, PMA, replicate2 |
| GSM6261729 |
THP-1 cells, shUHRF1, DMSO, replicate1 |
| GSM6261730 |
THP-1 cells, shUHRF1, DMSO, replicate2 |
| GSM6261731 |
THP-1 cells, shUHRF1, PMA, replicate1 |
| GSM6261732 |
THP-1 cells, shUHRF1, PMA, replicate2 |
| GSM6261733 |
THP-1 cells, shDNMT1, DMSO, replicate1 |
| GSM6261734 |
THP-1 cells, shDNMT1, DMSO, replicate2 |
| GSM6261735 |
THP-1 cells, shDNMT1, PMA, replicate1 |
| GSM6261736 |
THP-1 cells, shDNMT1, PMA, replicate2 |
| GSM6261737 |
THP-1 cells, shDNMT3B, DMSO, replicate1 |
| GSM6261738 |
THP-1 cells, shDNMT3B, DMSO, replicate2 |
| GSM6261739 |
THP-1 cells, shDNMT3B, PMA, replicate1 |
| GSM6261740 |
THP-1 cells, shDNMT3B, PMA, replicate2 |
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| Relations |
| BioProject |
PRJNA851905 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE206742_read_count.txt.gz |
744.1 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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