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Series GSE20982 Query DataSets for GSE20982
Status Public on Jun 19, 2012
Title Murine small intestinal crypt cell line IEC-6: control vs. TGF-beta stimulated
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus; Human alphaherpesvirus 1; Human betaherpesvirus 5; Murid betaherpesvirus 1; Human gammaherpesvirus 4; JC polyomavirus; Human immunodeficiency virus 1; Murid gammaherpesvirus 4; Human gammaherpesvirus 8; Human polyomavirus 1; Macaca mulatta polyomavirus 1
Sample organism Rattus norvegicus
Experiment type Non-coding RNA profiling by array
Summary microRNA profiling of rat small intestinal crypt cell IEC-6. Comparing control untreated with cells treated with transforming growth factor-beta (TGF-beta). TGF-beta stimulated cell differentiation, as observed in the stimulation of intestinal epithelial cell markers (alkaline phophotase, villin, aminopeptidase N, etc.).
 
Overall design Two condition experiment. Control vs TGF-beta treatment. Biological replicates: 3 control, 3 treated. Independently grown and harvested. One replicate per array
 
Contributor(s) Liao Y, Lönnerdal B
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 19, 2010
Last update date May 10, 2016
Contact name Bo Lonnerdal
E-mail(s) bllonnerdal@ucdavis.edu
Organization name University of California, Davis
Department Nutrition
Lab 3329 Meyer Hall
Street address 1 Shields Ave.
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (1)
GPL7723 miRCURY LNA microRNA Array, v.11.0 - hsa, mmu & rno
Samples (3)
GSM524622 TGF-beta stimulated vs. control IEC-6 cell replicate 1
GSM524623 TGF-beta stimulated vs. control IEC-6 cell replicate 2
GSM524624 TGF-beta stimulated vs. control IEC-6 cell replicate 3
Relations
BioProject PRJNA124489

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE20982_RAW.tar 2.0 Mb (http)(custom) TAR (of TXT)
GSE20982_analysis.xls.gz 48.8 Kb (ftp)(http) XLS
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data included within Sample table
Processed data is available on Series record

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