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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 19, 2022 |
| Title |
Single cell RNA-seq in small intestine |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Identify cytotoxic CD4+ T cells in human intestine and analyze characteristics of the population in IBD patients by using single cell RNA-seq
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| Overall design |
CD4+CD8A+ T cells in human intestine of IBD patients are extracted and compared with control samples and with mouse CD4CTLs
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| Contributor(s) |
Tanemoto S, Sujino T, Miyamoto K, Yoshimatsu Y, Moody J, Ando Y, Koya I, Harada Y, Tojo AO, Ono K, Hayashi Y, Takabayashi K, Okabayashi T, Teratani T, Mikami Y, Nakamoto N, Hosoe N, Ogata H, Hon C, Shin JW, Kanai T |
| Citation(s) |
36353619 |
| Submission date |
Aug 10, 2022 |
| Last update date |
Nov 29, 2022 |
| Contact name |
Jonathan Moody |
| E-mail(s) |
jonathan.moody@riken.jp
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| Organization name |
RIKEN Center for Integrative Medical Sciences
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| Street address |
1-7-22 Suehiro-cho
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| City |
Yokohama |
| ZIP/Postal code |
230-0045 |
| Country |
Japan |
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| Platforms (1) |
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| Samples (2) |
| GSM6443304 |
Control (nonlesion from cancer patient) and Ulcerative colitis TFHS000025 |
| GSM6443305 |
Control (nonlesion from cancer patient) and Crohn disease TFHS000053 |
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| Relations |
| BioProject |
PRJNA868373 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE210955_RAW.tar |
79.3 Mb |
(http)(custom) |
TAR (of CSV, MTX, TSV, TXT) |
| GSE210955_readme.txt |
2.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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