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| Status |
Public on Jan 19, 2023 |
| Title |
Cellular responses to long-term phosphate starvation of fission yeast: Maf1 determines fate choice between quiescence and death associated with aberrant tRNA biogenesis |
| Organism |
Schizosaccharomyces pombe |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
This RNA-Seq analysis compares gene expression of fission yeast (Schizosaccharomyces pombe) strains prior to phosphate starvation (0 HR) and at various times after phosphate starvation (4, 8, 12, 24, 36, and 48 HR) contrasting to the WT fission yeast S. pombe cells grown in phosphate replete conditions (WT 0HR)
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| Overall design |
13 test samples and 1 control sample was processed (each sample has 3 replicate experiments)
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| Contributor(s) |
Garg A, Shuman S |
| Citation(s) |
36794724 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R35 GM126945 |
Mechanisms of DNA and RNA transactions |
Sloan Kettering Institute for Cancer Research |
Stewart H Shuman |
| R01 GM134021 |
Inositol pyrophosphate dynamics affect RNA 3'-processing/transcription termination |
WEILL MEDICAL COLLEGE OF CORNELL UNIVERSITY |
BEATE SCHWER |
|
| Submission date |
Sep 15, 2022 |
| Last update date |
Apr 20, 2023 |
| Contact name |
Angad Garg |
| Organization name |
Memorial Sloan Kettering Cancer Center
|
| Department |
Molecular Biology
|
| Lab |
Stewart Shuman
|
| Street address |
RRL-865 430 E 67th St.
|
| City |
New York |
| State/province |
New York |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL28961 |
Illumina NovaSeq 6000 (Schizosaccharomyces pombe) |
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| Samples (14)
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| This SubSeries is part of SuperSeries: |
| GSE217953 |
Cellular responses to long-term phosphate starvation of fission yeast: Maf1 determines fate choice between quiescence and death associated with aberrant tRNA biogenesis |
|
| Relations |
| BioProject |
PRJNA880878 |
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