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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 29, 2010 |
| Title |
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
20371350 |
| Submission date |
Apr 28, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Markus Hafner |
| E-mail(s) |
mhafner@rockefeller.edu
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| Phone |
+1 212 327 7696
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| Fax |
+1212 327 7652
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| Organization name |
The Rockefeller University
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| Department |
Laboratory of RNA Molecular Biology
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| Lab |
Tuschl lab
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| Street address |
1230 York Ave, Box 186
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
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| Platforms (2) |
| GPL570 |
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array |
| GPL9052 |
Illumina Genome Analyzer (Homo sapiens) |
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| Samples (29)
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| GSM538798 |
HEK 293 cells expressing FLAG/HA-tagged QKI, mock-transfected, replicate 1 |
| GSM538799 |
HEK 293 cells expressing FLAG/HA-tagged QKI, mock-transfected, replicate 2 |
| GSM538800 |
HEK 293 cells expressing FLAG/HA-tagged QKI, siRNA set A transfected, replicate 1 |
| GSM538801 |
HEK 293 cells expressing FLAG/HA-tagged QKI, siRNA set A transfected, replicate 2 |
| GSM538802 |
HEK 293 cells expressing FLAG/HA-tagged QKI, siRNA set B transfected, replicate 1 |
| GSM538803 |
HEK 293 cells expressing FLAG/HA-tagged QKI, siRNA set B transfected, replicate 2 |
| GSM538804 |
HEK 293 cells expressing FLAG/HA-tagged IGF2BP1, mock-transfected, replicate 1 |
| GSM538805 |
HEK 293 cells expressing FLAG/HA-tagged IGF2BP1, mock-transfected, replicate 2 |
| GSM538806 |
HEK 293 cells expressing FLAG/HA-tagged IGF2BP1, siRNA-transfected, replicate 1 |
| GSM538807 |
HEK 293 cells expressing FLAG/HA-tagged IGF2BP1, siRNA-transfected, replicate 2 |
| GSM538818 |
HEK 293 cells, mock-transfected, replicate 1 |
| GSM538819 |
HEK 293 cells, mock-transfected, replicate 2 |
| GSM538820 |
HEK 293 cells, top 25 miRNAs inhibited, siRNA-transfected, replicate 1 |
| GSM538821 |
HEK 293 cells, top 25 miRNAs inhibited, siRNA-transfected, replicate 2 |
| GSM545206 |
IGF2BP1 |
| GSM545207 |
IGF2BP1_6SG |
| GSM545208 |
IGF2BP2 |
| GSM545209 |
IGF2BP3 |
| GSM545210 |
Pumilio2 |
| GSM545211 |
QKI |
| GSM545212 |
AGO1 |
| GSM545213 |
AGO2 |
| GSM545214 |
AGO3 |
| GSM545215 |
AGO4 |
| GSM545216 |
AGO2, miR124 |
| GSM545217 |
AGO2, miR7 |
| GSM545218 |
TNRC6A |
| GSM545219 |
TNRC6B |
| GSM545220 |
TNRC6C |
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| This SuperSeries is composed of the following SubSeries:
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| GSE21574 |
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP: QKI data |
| GSE21575 |
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP: IGF2BP data |
| GSE21577 |
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP: miRNA inhibition data |
| GSE21918 |
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP: sequencing data |
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| Relations |
| BioProject |
PRJNA127013 |
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