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Series GSE218606 Query DataSets for GSE218606
Status Public on Nov 30, 2022
Title Porphyromonas gingivalis outer membrane vesicles promote apoptosis via msRNA-regulated DNA methylation in periodontitis
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The outer membrane vesicles (OMVs) produced by Porphyromonas gingivalis (P. gingivalis) contain a variety of bioactive molecules that may be involved in the progression of periodontitis. However, the participation of P. gingivalis OMVs in the development of periodontitis has not been elucidated. Here we isolated P. gingivalis OMVs and confirmed their participation in periodontitis both in vivo and in vitro. Microcomputed Tomography (micro-CT) and histological analysis showed that under the stimulation of P. gingivalis OMVs, the alveolar bone of rats was significantly resorbed in vivo. We found that P. gingivalis OMVs were taken up by hPDLCs (human Periodontal Ligament Cells, hPDLCs) in vitro, then subsequently resulting in apoptosis and inflammatory cytokines releasing which was accomplished by the microRNA-size small RNAs (msRNAs) sRNA45033 in the P. gingivalis OMVs.
Through bioinformatics analysis and screening of target genes, Chromobox 5 (CBX5) was identified as the downstream target of screened-out small RNA s45033. Using dual-luciferase reporter assay, overexpression, and knockdown methods, s45033 was confirmed to target CBX5 to regulate hPDLCs apoptosis. In addition, Cleavage Under Targets and Tagmentation (Cut&Tag) analysis confirmed the mechanism that CBX5 regulates apoptosis through the methylation of p53 DNA. Collectively, these findings indicate that the role of P. gingivalis OMVs is immunologically relevant and related to bacterial virulence in the development of periodontitis.
 
Overall design hPDLCs were treated with LPS, P. gingivalis 33277 OMVs, P. gingivalis W83 OMVs
 
Contributor(s) Fan R, Xu Y, Zhou Y, Chen X, He F, Peng W, Li L, Wang X
Citation(s) 36629433
Submission date Nov 22, 2022
Last update date May 31, 2023
Contact name Ruyi Fan
E-mail(s) wangxingzhi1234@outlook.com
Phone 15895917699
Organization name Nanjing Medical University
Department Department of Periodontics
Street address 1 Shanghai Road
City Nanjing
State/province Jinngsu
ZIP/Postal code 210029
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (12)
GSM6753199 OMV1 -replicate 1
GSM6753200 OMV1 -replicate 2
GSM6753201 OMV1 -replicate 3
Relations
BioProject PRJNA904498

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE218606_gene_count.txt.gz 2.4 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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