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Series GSE218870 Query DataSets for GSE218870
Status Public on Nov 30, 2022
Title Ssc-miR-221-3p regulates melanin production in Xiang pigs melanocytes by targeting the TYRP1 gene
Organism Sus scrofa
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary The TYRP1 gene can affect melanogenesis in melanocytes of the Xiang pigs, and ssc-miR-221-3p targets the TYRP1 gene to affect melanogenesis in melanocytes of the Xiang pigs.
 
Overall design To investigate the mRNAs and miRNAs affecting melanogenesis in melanocytes in Xiang pigs.
We screened genes and miRNAs affecting melanin in Xiang pigs by transcriptome sequencing, and experimentally verified whether there is a directional regulatory relationship between the screened genes and miRNAs and whether they can jointly affect melanogenesis in Xiang pigs.
 
Contributor(s) Yuan W, Qin H, Bi H, Zhao D, Zhang Y, Chen W
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA869578
Submission date Nov 28, 2022
Last update date Dec 07, 2022
Contact name wei yuan
Organization name Guizhou University
Department College of Animal Science
Lab Key Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region
Street address Huaxi District
City Guiyang
State/province Guizhou Province
ZIP/Postal code 550025
Country China
 
Platforms (1)
GPL22918 HiSeq X Ten (Sus scrofa)
Samples (6)
GSM6758011 Skin Tissue,white,S02
GSM6758012 Skin Tissue,black,S03
GSM6758013 Skin Tissue,black,S04

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE218870_All_miRNA.expression.list.txt.gz 26.4 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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