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Series GSE22078 Query DataSets for GSE22078
Status Public on Jun 02, 2010
Title [E-TABM-722] Transcription factor binding evolution in five vertebrates
Organisms Gallus gallus; Homo sapiens; Canis lupus familiaris; Mus musculus; Monodelphis domestica
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Five-vertebrate ChIP-seq reveals the evolutionary dynamics of trancription factor binding. The SRF files for this experiment can be found in the European Read Archive with study accession number ERP000054.

ArrayExpress Submission Date: Apr 07 2010
ArrayExpress Release Date: Apr 08 2010

Publication Author List: Dominic Schmidt; Michael D Wilson; Benoit Ballester; Petra C Schwalie; Gordon D Brown; Aileen Marshall; Claudia Kutter; Stephen Watt; Celia P Martinez-Jimenz; Sarah MacKay; Iannis Talianidis; Paul Flicek; Duncan T Odom
Publication Title: Transcription factor binding evolution in five vertebrates

Person Roles: submitter
Person Last Name: Flicek
Person First Name: Paul
Person Email: flicek@ebi.ac.uk
Person Address: Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Person Affiliation: EBI
 
Overall design AEExperimentDisplayName: ChIP-seq of Canis familiaris, Gallus gallus, Mus musculus, Macaca mulatta, Monodelphis domestica to investigate CEBPA and HNF4a binding in five vertebrates
AEExperimentType: ChIP-seq
Experimental Design: binding_site_identification_design
Experimental Design: high_throughput_sequencing_design
Experimental Design: species_design
 
Contributor(s) Flicek P
Citation(s) 20378774
Submission date Jun 01, 2010
Last update date May 15, 2019
Organization European Bioinformatics Institute
E-mail(s) miamexpress@ebi.ac.uk
Lab ArrayExpress
Street address Wellcome Trust Genome Campus
City Hinxton
State/province Cambridgeshire
ZIP/Postal code CB10 1SD
Country United Kingdom
 
Platforms (5)
GPL9052 Illumina Genome Analyzer (Homo sapiens)
GPL9185 Illumina Genome Analyzer (Mus musculus)
GPL10223 Illumina Genome Analyzer (Gallus gallus)
Samples (61)
GSM548865 [E-TABM-722] do100_Input_liver_none_cfa4_CRI01
GSM548866 [E-TABM-722] do107_Input_liver_none_cfa4_CRI01_h0_t0
GSM548867 [E-TABM-722] do131_Input_liver_none_mmuC57BL65_CRI01
Relations
ArrayExpress E-TABM-722
SRA ERP000054
BioProject PRJNA128961

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided
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Processed data not provided for this record
Raw data are available in SRA
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