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Series GSE22760 Query DataSets for GSE22760
Status Public on Aug 18, 2010
Title Small RNA profiling of RNase III enzyme deficient DN3 thymocytes, Tregs, activated CD4+ T cells, and embryonic fibroblasts
Organism Mus musculus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Here we analyze the small RNA species in the following:
1. DN3 thymocytes following inactivation of LoxP flanked Drosha and Dicer alleles with Lck-cre
2. Tregs following inactivation of LoxP flanked Drosha and Dicer alleles with CD4-cre
3. activated CD4+ T cells following inactivation of LoxP flanked Drosha and Dicer alleles with CD4-cre
4. MEFs following inactivation of LoxP flanked Drosha and Dicer alleles with Rosa26-CreER and 4-OH tamoxifen treatment
 
Overall design Fractionation of small RNAs (19-30nt) and cloning of only RNA with 5' phosphates and 3' hydroxyls
 
Contributor(s) Chong MM
Citation(s) 20713509
Submission date Jul 06, 2010
Last update date May 15, 2019
Contact name Mark Chong
E-mail(s) mchong@svi.edu.au
Organization name St Vincent's Institute of Medical Research
Street address 9 Princes Street
City Fitzroy
State/province Victoria
ZIP/Postal code 3065
Country Australia
 
Platforms (1)
GPL9250 Illumina Genome Analyzer II (Mus musculus)
Samples (12)
GSM562827 DN3_control
GSM562828 DN3_Drosha
GSM562829 DN3_Dicer
Relations
SRA SRP002816
BioProject PRJNA128273

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE22760_RAW.tar 1.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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