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Series GSE23118 Query DataSets for GSE23118
Status Public on Dec 31, 2011
Title Cellular response to protein-conjugated nanoparticles
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Interaction of nanomaterials with the mammalian cells remains to be poorly understood at the molecular level. Here we report the first synthesis of hybrid nanomaterial termed phage mimetic nanorods (PMN’s) inspired from filamentous bacteriophage present in nature. We emulate filamentous bacteriophage structure by combining two separate nanoscale entities, one functionalized gold nanorods and the other is coat proteins isolated from filamentous bacteriophage obtained through landscape phage screening. Utilizing biochemical interactions between a phage-derived protein and functionalized gold nanorods, we synthesized novel phage mimetic nanorods. The resulting nanovectors showed excellent multi functional properties including target specificity, imaging and photo destruction ability in a model SKBR-3 breast cancer cells. In addition, to gain insight into the molecular interactions involved during internalization of PMNs by SKBR-3 cells, we performed gene expression profiling of cells exposed to PMNs as compared with naive cells. We identified 70 upregulated and 26 downregulated genes responding to PMNs. Heparin binding internalization was identified as most plausible mechanisms of PMNs entry. Members of Major Histocompatibility complex I (MHC class I) were activated by PMNs, leading to enhanced lysosome and proteasome activity. Seven members of poorly annotated G antigen family (GAGE) of genes were upregulated, and may represent novel mechanism of PMNs entry recognition by cells. In summary, we present a versatile technique of PMNs production as any protein isolated from phage libraries selected against any in vitro and in vivo cells can be used as a source to synthesize PMN’s. This study also opens new avenues to understand the role of nanomaterials at the molecular level.
Investigate the effect of phage mimetic nanorods onto SKBT-3 cells
 
Overall design Two groups were compared, three biological replicates each. One group was control cells and the other was test.
 
Contributor(s) Abbineni G, Liu A, Dozmorov M, Qui P, Modali S, Safiejko-Mroczka B, Mao C
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Submission date Jul 23, 2010
Last update date Feb 18, 2019
Contact name Mikhail Dozmorov
E-mail(s) mdozmorov@vcu.edu
Organization name Virginia Commonwealth University
Department Biostatistics
Street address 830 E Main St
City Richmond
State/province VA
ZIP/Postal code 23298
Country USA
 
Platforms (1)
GPL6884 Illumina HumanWG-6 v3.0 expression beadchip
Samples (16)
GSM569486 Cells_Control_rep1
GSM569487 Cells_Control_rep2
GSM569488 Cells_Control_rep3
Relations
BioProject PRJNA131509

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE23118_RAW.tar 6.3 Mb (http)(custom) TAR
GSE23118_non-normalized.txt.gz 1.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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