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Series GSE23539 Query DataSets for GSE23539
Status Public on Sep 21, 2010
Title Identification of immediate early transcriptional targets of ephrin-B1 forward signaling
Organism Mus musculus
Experiment type Expression profiling by array
Summary The goal of this study was to identify immediate early transcriptional targets of ephrin-B1 forward signaling that are relevant to palatogenesis.
The Ephs compose a family of receptor tyrosine kinase signaling molecules that can be activated by their cognate ligands, the ephrins. Despite the importance of Eph/ephrin signaling in a wide variety of developmental and cell biological processes, a potential downstream transcriptional response has not been explored. To understand the role of ephrin-B1 signaling in palatogenesis, we examined transcriptional response to ephrin-B1 in a primary mouse embryonic palatal shelf cell culture system. We find an immediate early signature of gene expression that reflects the activation of Erk/MAPK signaling by ephrin-B1 signaling in the palatal shelves.
 
Overall design Induction of primary palate cells with 2 ug/ml of pre-clustered ephrin-B1 for one hour. Uninduced primary palate cells are the control. Four replicates each.
 
Contributor(s) Bush JO, Soriano P
Citation(s) 20844017
Submission date Aug 10, 2010
Last update date Jan 18, 2013
Contact name Jeffrey Ohmann Bush
E-mail(s) jeffrey.bush@mssm.edu, johmannbush@gmail.com
Organization name Mount Sinai School of Medicine
Department Developmental and Regenerative Biology
Lab Soriano
Street address One Gustave Levy Place, Box 1020
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL6105 Illumina mouse-6 v1.1 expression beadchip
Samples (8)
GSM577137 MEP_uninduced_rep1
GSM577138 MEP_uninduced_rep2
GSM577139 MEP_uninduced_rep3
Relations
BioProject PRJNA131747

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE23539_RAW.tar 5.2 Mb (http)(custom) TAR
GSE23539_non-normalized.txt.gz 1.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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