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GEO accession:
Series GSE23622
Query DataSets for GSE23622
Status
Public on Jan 01, 2011
Title
Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes
Organism
Mus musculus
Experiment type
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
22174696
Submission date
Aug 13, 2010
Last update date
May 15, 2019
Contact name
Christopher Benner
E-mail(s)
cbenner@ucsd.edu
Organization name
University of California, San Diego (UCSD)
Department
Medicine
Street address
9500 Gilman Dr. MC 0640
City
La Jolla
State/province
California
ZIP/Postal code
92093-0640
Country
USA
Platforms (4)
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GPL6100
Illumina mouseRef-8 v1.0 expression beadchip
GPL7202
Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version)
GPL9185
Illumina Genome Analyzer (Mus musculus)
GPL9250
Illumina Genome Analyzer II (Mus musculus)
Samples (55)
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GSM537446
B cell ctrl Expression (Cy5)
GSM537447
B cell ctrl Expression (Cy3)
GSM537448
Macrophage ctrl Expression (Cy5)
GSM537449
Macrophage ctrl Expression (Cy3)
GSM537987
ThioMac-H3K4me3-ChIP-Seq
GSM537988
ThioMac-input-ChIP-Seq
GSM537992
Bcell-H3K4me3-ChIP-Seq
GSM537993
Bcell-input-ChIP-Seq
GSM579112
ThioMac-H3K4me3-Kdo2-1h-ChIP-Seq
GSM579113
Bcell-H3K4me3-Kdo2-1h-ChIP-Seq
GSM579114
BMDM-H3K4me3-ChIP-Seq
GSM579115
BMDM-H3K4me3-Kdo2-1h-ChIP-Seq
GSM579116
ThioMac-H3ac-ChIP-Seq
GSM579117
ThioMac-H3ac-Kdo2-1h-ChIP-Seq
GSM579118
ThioMac-H4K5ac-ChIP-Seq
GSM579119
ThioMac-H4K5ac-Kdo2-1h-ChIP-Seq
GSM579120
ThioMac-H4K8ac-ChIP-Seq
GSM579121
ThioMac-H4K8ac-Kdo2-1h-ChIP-Seq
GSM579122
ThioMac-H4K12ac-ChIP-Seq
GSM579123
ThioMac-H4K12ac-Kdo2-1h-ChIP-Seq
GSM579124
ThioMac-PolII-ChIP-Seq
GSM579125
ThioMac-PolII-Kdo2-1h-ChIP-Seq
GSM579126
RAW-Tbp-ChIP-Seq
GSM579127
ThioMac-totalRNA-RNA-Seq
GSM579128
ThioMac-totalRNA-Kdo2-1h-RNA-Seq
GSM579129
ThioMac-GroSeq-RNA-Seq
GSM579130
ThioMac-GroSeq-Kdo2-1h-RNA-Seq
GSM579131
B cell Kdo2 1h Expression (Cy5)
GSM579132
B cell Kdo2 1h Expression (Cy3)
GSM579133
B cell Ctrl 12h Expression (Cy5)
GSM579134
B cell Ctrl 12h Expression (Cy3)
GSM579135
B cell Kdo2 12h Expression (Cy5)
GSM579136
B cell Kdo2 12h Expression (Cy3)
GSM579137
Macrophage Kdo2 1h Expression (Cy5)
GSM579138
Macrophage Kdo2 1h Expression (Cy3)
GSM579139
Macrophage Ctrl 12h Expression (Cy5)
GSM579140
Macrophage Ctrl 12h Expression (Cy3)
GSM579141
Macrophage Kdo2 12h Expression (Cy5)
GSM579142
Macrophage Kdo2 12h Expression (Cy3)
GSM579143
BMDM Ctrl 1h Expression (Cy5)
GSM579144
BMDM Ctrl 1h Expression (Cy3)
GSM579145
BMDM Kdo2 1h Expression (Cy5)
GSM579146
BMDM Kdo2 1h Expression (Cy3)
GSM579147
BMDM Ctrl 12h Expression (Cy5)
GSM579148
BMDM Ctrl 12h Expression (Cy3)
GSM579149
BMDM Kdo2 12h Expression (Cy5)
GSM579150
BMDM Kdo2 12h Expression (Cy3)
GSM579151
Macrophage Ctrl with siMLL Expression rep1
GSM579152
Macrophage Ctrl with siMLL Expression rep2
GSM579153
Macrophage Ctrl with siMLL Expression rep3
GSM579154
Macrophage Ctrl with siCtrl Expression
GSM579155
Macrophage Kdo2 for 6h with siCtrl Expression
GSM579156
Macrophage Kdo2 for 6h with siMLL Expression
GSM579157
Macrophage Ctrl with siGABP Expression
GSM579158
Macrophage Kdo2 for 6h with siGABP Expression
This SuperSeries is composed of the following SubSeries:
GSE23619
Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Illumina sequencing data)
GSE23620
Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Agilent expression data)
GSE23621
Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Illumina expression data)
Relations
BioProject
PRJNA129939
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE23622_RAW.tar
4.4 Gb
(http)
(custom)
TAR (of BED, FA, TXT)
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