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Series GSE25021 Query DataSets for GSE25021
Status Public on Feb 05, 2011
Title [E-TABM-828] ChIP-Seq in human MCF7 and HEPG2 cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-Seq study in human MCF7 and HEPG2 cells using antibodies against CTCF (Millipore, 07-729), STAG1 (abcam, ab4457), RAD21 (abcam, ab992), ERa (santa cruz, sc-543), CEBPa (santa cruz, sc-9314)

ArrayExpress Release Date: 2010-05-12

Publication Title: A CTCF-independent role for cohesin in tissue-specific transcription
Publication Author List: Dominic Schmidt, Petra C. Schwalie, Caryn S. Ross-Innes, Antoni Hurtado, Gordon D. Brown, Jason S. Carroll, Paul Flicek and Duncan T. Odom

Person Roles: submitter
Person Last Name: Schwalie
Person First Name: Petra Catalina
Person Email: schwalie@ebi.ac.uk
Person Address:
Person Affiliation: EBI
 
Overall design Experimental Design: binding_site_identification_design
Experimental Design: high_throughput_sequencing_design
Experimental Design: ChIP-seq
 
Citation(s) 20219941
Submission date Oct 29, 2010
Last update date May 15, 2019
Organization European Bioinformatics Institute
E-mail(s) miamexpress@ebi.ac.uk
Lab ArrayExpress
Street address Wellcome Trust Genome Campus
City Hinxton
State/province Cambridgeshire
ZIP/Postal code CB10 1SD
Country United Kingdom
 
Platforms (1)
GPL9052 Illumina Genome Analyzer (Homo sapiens)
Samples (32)
GSM614606 [E-TABM-828] Input_breast_none_hsamcf7 1
GSM614607 [E-TABM-828] Input_breast_none_hsamcf7 2
GSM614608 [E-TABM-828] SA1_breast_ab4457_hsaMCF7_treat 1
Relations
ArrayExpress E-TABM-828
SRA ERP000209
BioProject PRJNA134393

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25021_CEBPA.gff.gz 557.6 Kb (ftp)(http) GFF
GSE25021_CTCF.gff.gz 844.9 Kb (ftp)(http) GFF
GSE25021_CTCF_treat.gff.gz 916.7 Kb (ftp)(http) GFF
GSE25021_Cohesin.gff.gz 1.3 Mb (ftp)(http) GFF
GSE25021_Cohesin_treat.gff.gz 1.7 Mb (ftp)(http) GFF
GSE25021_Era_treat.gff.gz 887.2 Kb (ftp)(http) GFF
GSE25021_HNF4a.gff.gz 587.8 Kb (ftp)(http) GFF
GSE25021_Rad21.gff.gz 522.6 Kb (ftp)(http) GFF
GSE25021_Rad21_treat.gff.gz 687.4 Kb (ftp)(http) GFF
GSE25021_SA1.gff.gz 851.6 Kb (ftp)(http) GFF
GSE25021_SA1_treat.gff.gz 1.0 Mb (ftp)(http) GFF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
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