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| Status |
Public on Dec 18, 2010 |
| Title |
Expression data from the comparison between CD8 single positive (SP) thymocytes of CIITAtgpIV-/- mouse and B6 WT mouse |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
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| Summary |
Thymocyte-thymocyte interaction can be very efficiently occur in CIITAtgpIV-/- mouse. We analyzed the gene expression profile between CD8+ T cells generated in CIITAtgpIV-/- mouse, and compared it to that of CD8+ T cells from B6 WT mouse.
In this dataset, we include the expression data obtained from CD8 single positive thymocytes generated in CIITAtgpIV-/- mouse and B6 WT mouse. These data are used to obtain 279 genes that showed differentially increased expression in CIITAtgpIV-/- mouse.
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| Overall design |
Total 1 sample from 2-4 CIITAtgpIV-/- mice and B6 WT mice were analyzed. We compared these using Affymetrix Expression console1.1, R affy-package(2.9.2), DAVID. Genes with an FDR≤10% and a fold-change ≥2 were selected.
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| Contributor(s) |
Kang BH, Lee YJ |
| Citation(s) |
21478404 |
| Submission date |
Dec 15, 2010 |
| Last update date |
Mar 04, 2019 |
| Contact name |
Hye Sook Min |
| E-mail(s) |
lilloa@snuh.org
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| Phone |
82-2-2072-2828
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| Organization name |
Seoul National University College of Medicine
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| Department |
Pathology
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| Street address |
Chongnogu Yongondong 28
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| City |
Seoul |
| ZIP/Postal code |
110-744 |
| Country |
South Korea |
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| Platforms (1) |
| GPL6246 |
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version] |
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| Samples (2) |
| GSM640538 |
CD8 SP thymocytes from B6 WT mouse |
| GSM640539 |
CD8 SP thymocytes from CIITAtgpIV-/- mouse |
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| Relations |
| BioProject |
PRJNA135397 |
