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Series GSE26565 Query DataSets for GSE26565
Status Public on Sep 26, 2011
Title Reprogramming of mesenchymal stem cells by the synovial sarcoma-associated oncogene SYT-SSX2
Organisms Homo sapiens; Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by array
Summary Cellular identity is determined by its gene expression programs. The ability of the cell to change its identity and produce cell types outside its lineage is achieved by the activity of transcription controllers capable of reprogramming differentiation gene networks. The synovial sarcoma associated protein, SYT-SSX2, reprograms myogenic progenitors and human bone marrow-derived mesenchymal stem cells (BMMSCs) by dictating their commitment to a pro-neural lineage. It fulfills this function by directly targeting an extensive array of neural-specific genes as well as genes of developmental pathway mediators. Concomitantly, the ability of both myoblasts and BMMSCs to differentiate into their normal myogenic and adipogenic lineages was compromised. Synovial sarcoma is believed to arise in mesenchymal stem cells where formation of the t(X;18) translocation product, SYT-SSX, constitutes the primary event in the cancer. SYT-SSX is therefore believed to initiate tumorigenesis in its target stem cell. The data presented here allow a glimpse at the initial events that likely occur when SYT-SSX2 is first expressed and its dominant function in subverting the nuclear program of the stem cell, leading to its aberrant differentiation, as a first step toward transformation. In addition, we identified the fibroblast growth factor receptor gene, Fgfr2, as one occupied and upregulated by SYT-SSX2. Knockdown of FGFR2 in both BMMSCs and synovial sarcoma cells abrogated their growth and attenuated their neural phenotype. These results support the notion that the SYT-SSX2 nuclear function and differentiation effects are conserved throughout sarcoma development and are required for its maintenance beyond the initial phase. They also provide the stem cell regulator, FGFR2 as a promising candidate target for future synovial sarcoma therapy.

This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Contributor(s) Garcia CB, Eid JE
Citation(s) 21996728, 22594313
Submission date Jan 11, 2011
Last update date Aug 14, 2019
Contact name Josiane Eid
E-mail(s) josiane.eid@vanderbilt.edu
Organization name Vanderbilt University
Street address 2220 Pierce Avenue
City Nashville
ZIP/Postal code 37232
Country USA
 
Platforms (3)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
GPL6246 [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]
GPL9250 Illumina Genome Analyzer II (Mus musculus)
Samples (10)
GSM653005 vector control, replicate 1
GSM653006 vector control, replicate 2
GSM653007 SYTSSX2-expressing, replicate 1
This SuperSeries is composed of the following SubSeries:
GSE26562 Gene expression profile of SYT-SSX2-expressing C2C12 myoblasts
GSE26563 Gene expression profile of SYT-SSX2-expressing human bone marrow-derived mesenchymal stem cells
GSE26564 Genomewide occupancy of the synovial sarcoma-associated SYT-SSX2 oncoprotein in C2C12 myoblasts
Relations
BioProject PRJNA136229

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE26565_RAW.tar 35.8 Mb (http)(custom) TAR (of BED, CEL, TXT)
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