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Series GSE27434 Query DataSets for GSE27434
Status Public on Apr 21, 2013
Title Critical Requirement of the DNA Methyltransferase, Dnmt1, for the Development and Function of Foxp3+ Regulatory T Cells
Organism Mus musculus
Experiment type Expression profiling by array
Summary We investigated the role of DNMT1 in immune homeostasis by generating mice lacking DNMT1 in Foxp3+ T-regulatory (Treg) cells. These mice showed decreased peripheral Foxp3+ Tregs, complete loss of Foxp3+ Treg suppressive functions in vitro and in vivo, and died from autoimmunity by 3-4 weeks unless they received perinatal transfer of wild-type Tregs that prolonged their survival. Methylation of CpG-sites in the TSDR region of Foxp3 was unaffected by DNMT1 deletion, but microarray revealed more >500 proinflammatory and other genes were upregulated in DNMT1-/- Tregs. CD4-Cre-mediated DNMT1 deletion showed inability of conventional T cells to convert to Foxp3+ Treg under appropriate polarizing conditions. Hence, DNMT1 is absolutely necessary for maintenance of the gene program required for normal Treg development and function.
 
Overall design RNA from three independent samples of magnetically separated CD4+CD25+ Treg of fl-DNMT1/Foxp3cre mice, compared to wild type (C57BL6) control
 
Contributor(s) Wang L, Liu Y, Han R, Bhatti TR, Beier UH, Akimova T, Hancock WW
Citation(s) 23444399
Submission date Feb 22, 2011
Last update date May 04, 2018
Contact name Wayne W Hancock
Organization name CHOP/UPenn
Street address 916B ARC, 3615 Civic Ctr Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104-4318
Country USA
 
Platforms (1)
GPL8321 [Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array
Samples (6)
GSM678219 WT 1
GSM678220 WT 2
GSM678221 WT 3
Relations
BioProject PRJNA137079

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE27434_RAW.tar 11.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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