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Series GSE29121 Query DataSets for GSE29121
Status Public on May 07, 2011
Title Prospective isolation of a bipotential clonogenic liver progenitor cell in adult mice
Organism Mus musculus
Experiment type Expression profiling by array
Summary The molecular identification of adult hepatic stem/progenitor cells has been hampered by the lack of truly specific markers. To isolate putative adult liver progenitor cells, we used cell surface-marking antibodies, including MIC1-1C3, to isolate subpopulations of liver cells from normal adult mice or those undergoing an oval cell response and tested their capacity to form bilineage colonies in vitro. Robust clonogenic activity was found to be restricted to a subset of biliary duct cells antigenically defined as CD45–/CD11b–/CD31–/MIC1-1C3+/CD133+/CD26–, at a frequency of one of 34 or one of 25 in normal or oval cell injury livers, respectively. Gene expression analyses revealed that Sox9 was expressed exclusively in this subpopulation of normal liver cells and was highly enriched relative to other cell fractions in injured livers. In vivo lineage tracing using Sox9creERT2-R26RYFP mice revealed that the cells that proliferate during progenitor-driven liver regeneration are progeny of Sox9-expressing precursors. A comprehensive array-based comparison of gene expression in progenitor-enriched and progenitor-depleted cells from both normal and DDC (3,5-diethoxycarbonyl-1,4-dihydrocollidine or diethyl1,4-dihydro-2,4,6-trimethyl- 3,5-pyridinedicarboxylate)-treated livers revealed new potential regulators of liver progenitors.
 
Overall design Treated and untreated cells were sorted by cell surface markers then compared.

M+/133+ untreated: 4 biological and 1 technical replicate - total of 5
M-/133- untreated: 2 biological and 1 technical replicate - total of 3
M+/133+ DDC-treated: 4 biological replicates - total of 4
M-/133- DDC-treated: 4 biological replicates - total of 4
 
Contributor(s) Dorrell C, Erker L, Schug J, Kopp JL, Canaday PS, Fox AJ, Smirnova O, Duncan AW, Finegold MJ, Sande M, Kaestner KH, Grompe M
Citation(s) 21632826
Submission date May 06, 2011
Last update date May 10, 2018
Contact name Jonathan Schug
E-mail(s) jschug@pennmedicine.upenn.edu
Phone 215 898 0773
Organization name University of Pennsylvania
Department School of Medicine
Lab Next-Generation Sequencing Core
Street address 12-156 Smilow Ctr Trans Research
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104-5160
Country USA
 
Platforms (1)
GPL4134 Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Feature Number version)
Samples (16)
GSM721145 1B_Mp_133p_n1_1_Hyb5
GSM721146 4B_Mp_133p_2_Hyb9
GSM721147 1_Mp_133p_3_Hyb1
Relations
BioProject PRJNA140387

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29121_CALL_FC_FDR.txt.gz 743.0 Kb (ftp)(http) TXT
GSE29121_RAW.tar 154.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data are available on Series record

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