|
| Status |
Public on May 28, 2011 |
| Title |
RNA-seq of two paired normal and cancer tissues in two stage III colorectal cancer patients |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The RNA from two paired normal and colorectal tumor tissue were sequenced by Illumina genome analyzer. 0.8 to 1.1 million reads were generated. Sequencing data was aligned with human RNA, human mitochondrial DNA and human genomic DNA by BWA. Base calling and Phred-like score was calculated by SAMTools.
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| |
|
| Overall design |
Whole transcriptome sequence of paired normal and tumor tissues obtained from two colorectal cancer patients
|
| |
|
| Contributor(s) |
Luo J, Chang Y, Wei P, Lin Y, Chang C, Chiou C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
May 27, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Ji-Dung Luo |
| E-mail(s) |
b9103108@stmail.cgu.edu.tw
|
| Organization name |
Chang Gung University
|
| Department |
Graduate Institute of Biomedical Sciences, Division of Medical Biotechnology
|
| Street address |
No. 259, Wen-Hwa 1st road, Kwei-Shan
|
| City |
Tao-Yuan |
| ZIP/Postal code |
33302 |
| Country |
Taiwan |
| |
|
| Platforms (1) |
| GPL9052 |
Illumina Genome Analyzer (Homo sapiens) |
|
| Samples (4)
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|
| Relations |
| SRA |
SRP006900 |
| BioProject |
PRJNA141411 |
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