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Series GSE29988 Query DataSets for GSE29988
Status Public on Oct 24, 2011
Title The role of HIF in FH-associated renal neoplasia
Organism Mus musculus
Experiment type Expression profiling by array
Summary Fumarate hydratase (FH) mutations predispose to renal cysts cancer. These cancers overexpress hypoxia-inducible factor-alpha (Hif-1a). We have generated a conditional Fh1 (mouse FH) knockout mice that develop renal cysts and overexpress Hif-1a. In order to identify the contribution of Hif-1a to cyst formation we have intercrossed our mice with conditional HIf-1a KO mice.
 
Overall design We intercrossed Fh1/Hif1a mice with kidney specific cre recombinase (Ksp-Cre) and analysed kidney cyst formation. RNA was extracted from cysts from 4xFh1 KO, 4xFh1/Hif-1a KO and 4 control mice. For each comparison littermates were used and the animals were aged 15 weeks i.e. early cystic disease.
 
Contributor(s) Adam J, Hatipoglu E, O'Flaherty L, Ternette N, Sahgal N, Lockstone H, Baban D, Nye E, Stamp G, Kessler B, Frizzell N, Pugh C, El-Bahrawy M, Ratcliffe P, Pollard P
Citation(s) 22014577
Submission date Jun 15, 2011
Last update date Jan 16, 2019
Contact name Natasha Sahgal
Organization name University of Oxford
Department Ludwig Institute of Cancer Research
Street address Old Road Campus
City Oxford
ZIP/Postal code OX3 7DQ
Country United Kingdom
 
Platforms (1)
GPL6887 Illumina MouseWG-6 v2.0 expression beadchip
Samples (12)
GSM742220 Fh1 KO_ rep1
GSM742221 Fh1 KO_ rep2
GSM742222 Fh1 KO_ rep3
Relations
BioProject PRJNA140707

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29988_RAW.tar 15.8 Mb (http)(custom) TAR
GSE29988_non-normalized_data.txt.gz 3.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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