|
| Status |
Public on Jul 09, 2011 |
| Title |
RNA-Seq in GM12878 (ENCODE Project) |
| Project |
ENCODE
|
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We performed RNA-Seq as part of the ENCODE project in order to determine sites of allele-specific expression This was done in the GM12878 cell line which was genotyped as part of the pilot II phase of the 1000 genomes project. There is a matching ChIP-Seq experiments for a number of transcription factors were also performed on the same cell line.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
|
| |
|
| Overall design |
Transcriptome mapping using RNA-Seq for GM12878
|
| Web link |
http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/geo/info/ENCODE.html
|
| |
|
| Contributor(s) |
Rozowsky J, Raha D, Snyder M, Gerstein M |
| Citation(s) |
21811232 |
| BioProject |
PRJNA30709 |
| Submission date |
Jul 05, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Joel Rozowsky |
| E-mail(s) |
rozowsky@csb.yale.edu
|
| Phone |
203-432-5405
|
| Organization name |
Yale University
|
| Department |
Molecular Biophysics & Biochemistry
|
| Lab |
Gerstein Lab
|
| Street address |
266 Whitney Ave, Bass 437
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06520 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
|
| Samples (1) |
|
| This SubSeries is part of SuperSeries: |
| GSE30401 |
AlleleSeq: Analysis of Allele-Specific Expression and Binding in a Network Framework |
|
| Relations |
| SRA |
SRP007417 |
