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Series GSE30578 Query DataSets for GSE30578
Status Public on Mar 14, 2012
Title RNA mapping of Drosha deficient cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by array
Summary Here we show the microRNA genes can been very large and displaying many summarizing structural characteristics
 
Overall design MicroRNA biogenesis was ablated in CD4+ and CD8+ by deleted Rnasen gene (encoding Drosha). Poly A RNAs were extracted and analyzed by ultra high throughput sequencing
 
Contributor(s) Chong MM
Citation(s) 22379031
Submission date Jul 12, 2011
Last update date May 15, 2019
Contact name Mark Chong
E-mail(s) mchong@svi.edu.au
Phone 61-3-92313444
Organization name St Vincent's Institute of Medical Research
Street address 9 Princes Street
City Fitzroy
State/province Victoria
ZIP/Postal code 3065
Country Australia
 
Platforms (1)
GPL9250 Illumina Genome Analyzer II (Mus musculus)
Samples (4)
GSM758717 CD4 WT RNA-Seq
GSM758718 CD4 KO RNA-Seq
GSM758719 CD8 WT RNA-Seq
This SubSeries is part of SuperSeries:
GSE30584 RNA mapping of Drosha deficient cells, chromatin maps of mature T cells, and miRNA profiling of lymphopoiesis
Relations
SRA SRP007488
BioProject PRJNA154771

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30578_RAW.tar 137.5 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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