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Series GSE30619

Query DataSets for GSE30619

Status

Public on Jul 14, 2011

Title

[E-MTAB-612] GENCODE PCR-Seq Batch I

Project

ENCODE

Organism

Homo sapiens

Experiment type

Expression profiling by high throughput sequencing

Summary

As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is the RNASeq part of batch I, based on annotation from July 2008 (without pseudogenes).

ArrayExpress Release Date: 2011-05-01

Publication Title: GENCODE: producing a reference annotation for ENCODE
Publication Author List: Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R

Person Roles: submitter
Person Last Name: Kokocinski
Person First Name: Felix
Person Mid Initials:
Person Email: fsk@sanger.ac.uk
Person Phone: -498006
Person Address: Wellcome Trust Genome Campus, Hinxton, UK
Person Affiliation: Wellcome Trust Sanger Institute

Person Roles: investigator
Person Last Name: Hubbard
Person First Name: Tim
Person Mid Initials:
Person Email: th@sanger.ac.uk
Person Phone: -498055
Person Address: Wellcome Trust Genome Campus, Hinxton, UK
Person Affiliation: Wellcome Trust Sanger Institute

Person Roles: investigator
Person Last Name: Reymond
Person First Name: Alexandre
Person Mid Initials:
Person Email: Alexandre.Reymond@unil.ch
Person Phone:
Person Address: Lausanne, Switzerland
Person Affiliation: University of Lausanne

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

Overall design

Experimental Design: co-expression_design
Experimental Design: high_throughput_sequencing_design
Experimental Design: organism_part_comparison_design
Experimental Factor Name: ORGANISM_PART
Experimental Factor Type: organism_part

Web link

http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/geo/info/ENCODE.html

Citation(s)

16925838

BioProject

PRJNA30709

Submission date

Jul 12, 2011

Last update date

May 15, 2019

Organization

European Bioinformatics Institute