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| Status |
Public on Aug 29, 2011 |
| Title |
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Expression profiling by array
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
21804560 |
| Submission date |
Aug 29, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Matthew Iyer |
| E-mail(s) |
mkiyer@med.umich.edu
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| Phone |
7346154503
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| Organization name |
University of Michigan
|
| Department |
Michigan Center for Translational Pathology
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| Lab |
Chinnaiyan Lab
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| Street address |
5316 CCGC 0940 1400 E. Medical Center Drive
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| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109-0940 |
| Country |
USA |
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| Platforms (3) |
| GPL4133 |
Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version) |
| GPL9052 |
Illumina Genome Analyzer (Homo sapiens) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
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| Samples (67)
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| GSM618466 |
CA-HPV-10_pe_rep1 |
| GSM618467 |
CWR22_pe_rep1 |
| GSM618468 |
DU145_sr_rep1 |
| GSM618469 |
DU145_sr_rep2 |
| GSM618470 |
DU145_sr_rep3 |
| GSM618471 |
DU145_pe_rep1 |
| GSM618472 |
DU145_pe_rep2 |
| GSM618473 |
DU145_pe_rep3 |
| GSM618474 |
DU145_pe_rep4 |
| GSM618475 |
DU145_pe_rep5 |
| GSM618476 |
DU145_pe_rep6 |
| GSM618477 |
DU145_pe_rep7 |
| GSM618478 |
LAPC-4_pe_rep1 |
| GSM618479 |
LNCaP_sr_rep1 |
| GSM618480 |
LNCaP_sr_rep2 |
| GSM618481 |
LNCaP_sr_rep3 |
| GSM618482 |
LNCaP_sr_rep4 |
| GSM618483 |
LNCaP_sr_rep5 |
| GSM618484 |
LNCaP_sr_rep6 |
| GSM618485 |
LNCaP_sr_rep7 |
| GSM618486 |
LNCaP-CDS-parent_pe_rep1 |
| GSM618487 |
LNCaP-CDS1_pe_rep1 |
| GSM618488 |
LNCaP-CDS2_pe_rep1 |
| GSM618489 |
LNCaP-CDS3_pe_rep1 |
| GSM618490 |
MDA-Pca-2b_pe_rep1 |
| GSM618491 |
NCI-H660_pe_rep1 |
| GSM618492 |
PC3_pe_rep1 |
| GSM618493 |
PC3_sr_rep1 |
| GSM618494 |
PWR-1E_pe_rep1 |
| GSM618495 |
PrEC_sr_rep1 |
| GSM618496 |
PrEC_sr_rep2 |
| GSM618497 |
PrEC_pe_rep1 |
| GSM618498 |
PrEC_pe_rep2 |
| GSM618499 |
PrSMC_pe_rep1 |
| GSM618500 |
RWPE_sr_rep1 |
| GSM618501 |
RWPE_sr_rep2 |
| GSM618502 |
RWPE_sr_rep3 |
| GSM618503 |
RWPE_sr_rep4 |
| GSM618504 |
RWPE_sr_rep5 |
| GSM618505 |
RWPE_sr_rep6 |
| GSM618506 |
RWPE_sr_rep7 |
| GSM618507 |
RWPE_sr_rep8 |
| GSM618508 |
RWPE_sr_rep9 |
| GSM618509 |
VCaP_sr_rep1 |
| GSM618510 |
VCaP_sr_rep2 |
| GSM618511 |
VCaP_sr_rep3 |
| GSM618512 |
VCaP_sr_rep4 |
| GSM618513 |
VCaP_sr_rep5 |
| GSM618514 |
VCaP_sr_rep6 |
| GSM618515 |
VCaP_sr_rep7 |
| GSM618516 |
VCaP_sr_rep8 |
| GSM618517 |
VCaP_sr_rep9 |
| GSM618518 |
VCaP_sr_rep10 |
| GSM618519 |
WPE1-NB26_pe_rep1 |
| GSM618520 |
WPMY-1_pe_rep1 |
| GSM740115 |
LNCaP Cell Line, Control siRNA versus PCAT1-siRNA-2, rep 1 |
| GSM740116 |
LNCaP Cell Line, Control siRNA versus PCAT1-siRNA-2, rep 2 |
| GSM740117 |
LNCaP Cell Line, Control siRNA versus PCAT1-siRNA-2, rep 3 |
| GSM740118 |
LNCaP Cell Line, Control siRNA versus PCAT1-siRNA-3, rep 1 |
| GSM740119 |
LNCaP Cell Line, Control siRNA versus PCAT1-siRNA-3, rep 2 |
| GSM740120 |
LNCaP Cell Line, Control siRNA versus PCAT1-siRNA-3, rep 3 |
| GSM740121 |
LNCaP Cell Line, Control siRNA versus PCAT1-siRNA-4, rep 1 |
| GSM740122 |
LNCaP Cell Line, Control siRNA versus PCAT1-siRNA-4, rep 2 |
| GSM740123 |
LNCaP Cell Line, Control siRNA versus PCAT1-siRNA-4, rep 3 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE25183 |
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression (RNA-Seq data) |
| GSE29886 |
LNCaP Prostate Cancer Cells: Control vs. siRNA-PCAT1 Treated |
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| Relations |
| BioProject |
PRJNA145359 |
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