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Series GSE32421 Query DataSets for GSE32421
Status Public on Jan 02, 2013
Title NOD2-dependent licensing of the microbiota predispose to transmissible inflammation and tumorigenesis in the colon.
Organism Mus musculus
Experiment type Expression profiling by array
Summary Instability in the composition of gut bacterial communities, referred as dysbiosis, has been associated with important human intestinal disorders such as Crohn’s disease and colorectal cancer. Here, we show that dysbiosis coupled to Nod2 or Rip2 deficiency suffices to cause an increased risk for intestinal inflammation and colitis-associated carcinogenesis in mice. Aggravated epithelial lesions and dysplasia upon chemical-induced injury associated with loss of Nod2 or Rip2 can be prevented by antibiotics or anti-IL6R treatment. Nod2-mediated risk for intestinal inflammation and colitis-associated tumorigenesis is communicable through maternally-transmitted microbiota even to wild-type hosts. Disease progression was identified to drive complex NOD2-dependent changes of the colonic-associated microbiota. Reciprocal microbiota transplantation rescues the vulnerability of Nod2-deficient mice to colonic injury. Altogether, our results unveil an unexpected function for NOD2 in shaping a protective assembly of gut microbial communities, providing a rationale for intentional manipulation of genotype-dependent dysbiosis as a causative therapeutic principle in chronic intestinal inflammation.
 
Overall design Analysis used RNA extracted from colonic mucosa of untreated, antibiotics-treated or metronidazole-treated C57Bl/6J and Nod2-deficient mice in CAC model. Direct comparisons were performed as follow: C57Bl/6J untreated mice vs Nod2-deficient untreated mice, C57Bl/6J antibiotics-treated mice vs Nod2-deficient antibiotics-treated mice, C57Bl/6J metronidazole-treated mice vs Nod2-deficient metronidazole-treated mice, C57Bl/6J untreated mice vs C57Bl/6J antibiotics-treated mice, C57Bl/6J untreated mice vs C57Bl/6J metronidazole-treated mice, Nod2-deficient untreated mice vs Nod2-deficient antibiotics-treated mice, Nod2-deficient untreated mice vs Nod2-deficient metronidazole-treated mice. Indirect comparisons with control data were made across multiple arrays with raw data pulled from different channels for data analysis.
 
Contributor(s) Couturier A, Chamaillard M, Hot D, Huot L
Citation(s) 23281400, 35917251
Submission date Sep 27, 2011
Last update date Aug 11, 2022
Contact name David Hot
E-mail(s) david.hot@pasteur-lille.fr
Organization name Institut Pasteur de Lille
Department Center for Infection and Immunity of Lille
Lab Transcriptomics and Applied Genomics
Street address 1 rue du professeur Calmette
City Lille
ZIP/Postal code 59000
Country France
 
Platforms (1)
GPL7202 Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version)
Samples (8)
GSM802413 B6_repl1_No_treatment_vs_NOD2_repl1_No_treatment
GSM802414 B6_repl2_No_treatment_vs_NOD2_repl2_No_treatment
GSM802415 B6_ATB_treatment_vs_NOD2_ATB_treatment
Relations
BioProject PRJNA147907

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE32421_RAW.tar 176.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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