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Series GSE32993 Query DataSets for GSE32993
Status Public on Dec 07, 2012
Title Intralesional host response within eschars in Mediterranean spotted fever
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The host response within the eschar of inoculation during Mediterranean spotted fever (MSF) has been poorly studied. Our objective was to evaluate the host response by comparing transcriptional profiles of eschars to controls using a whole-genome microarray. Hierarchical clustering revealed a signature of eschars consisting of 698 genes. The genes included in this signature were mainly up-regulated and were predominantly associated with immune response and signalling. New molecules involved notably in microbicidal and innate immunity response have also been found up-regulated in eschars such as MMP1, Defensin β4, the proinflammatory S100A9, and the T cell attracting CCL-18. Genes down-regulated were mainly associated with biological regulation. We also observed that eschars from severe cases of MSF displayed a specific signature with notably difference in degree of modulation compared to eschars from non severe MSF cases. Some parameters identified in this work should be tested as biomarkers for prognostic assessment in future studies.
 
Overall design To evaluate the host response by comparing transcriptional profiles of eschars to controls
 
Contributor(s) Botelho-Nevers E, Ben Amara A, El Filali A, Mouffok N, Boudebouch N, Merhaj V, Raoult D, Mège JL
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Submission date Oct 14, 2011
Last update date Jan 23, 2019
Contact name adil ef
E-mail(s) adil.el-filali@univmed.fr
Organization name URMITE
Street address 27 bd jean Moulin
City marseille
ZIP/Postal code 13385 cedex 05
Country France
 
Platforms (1)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
Samples (25)
GSM817259 epidermal_cells_infected_rep1
GSM817260 epidermal_cells_infected_rep2
GSM817261 epidermal_cells_infected_rep3
Relations
BioProject PRJNA146507

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE32993_RAW.tar 227.9 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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