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Series GSE33473 Query DataSets for GSE33473
Status Public on May 01, 2013
Title Small RNA analysis of wildtype Mouse embryo and Adar1 null mouse embryo at E11.0 and E11.5 together with mRNA-seq results of E11.5
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Adar1 is an essential gene for mouse embryonic development. Adar1 null mouse embryos dies around E11.5 because of massive apoptosis.
Overall design Small RNA: 4 samples examined: wild type E11.0, ADAR1 null E11.0, wild type E11.5, ADAR1 null E11.5, mRNA-seq: wild type E11.5, ADAR1 null E11.5.
Contributor(s) Ota H, Sakurai M, Gupta R, Valente L, Wulff B, Ariyoshi K, Iizasa H, Davuluri RV, Nishikura K
Citation(s) 23622242
Submission date Nov 04, 2011
Last update date May 15, 2019
Contact name Kazuko Nishikura
Organization name The Wistar Institute
Department Gene Expression & Regulation
Street address 3601 Spruce Street
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104
Country USA
Platforms (1)
GPL9250 Illumina Genome Analyzer II (Mus musculus)
Samples (6)
GSM828140 Small RNAs from Mouse Embyro Day11
GSM828141 Small RNAs from ADAR1 KO Mouse Embyro Day11
GSM828142 Small RNAs from Mouse Embyro Day11.5
This SubSeries is part of SuperSeries:
GSE43192 ADAR1 forms a complex with Dicer to promote microRNA processing and RNA-induced gene silencing
SRA SRP009192
BioProject PRJNA148757

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33473_RAW.tar 1.6 Gb (http)(custom) TAR (of BED, SAM, TXT, WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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