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| Status |
Public on Aug 21, 2012 |
| Title |
Transcriptome of normal,paracancerous and cancerous colon tissues based on RNA-seq method |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To support our research of colon cancer in human genome, we conducted massively parallel pyrosequencing of mRNAs (RNA-seq) using normal,paracancerouse and cancerous human colon tissues. We obtained a total of 29.9M reads from normal,33.0M reads from paracancerous and 36.5M reads from cancerous.The RNA-seq data derived from the sample illustrated the differencially expreesion genes among normal,paracancerous and cancerous colon tissues of human.
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| Overall design |
3 samples examined: normal tissue, paracancerous tissue, cancerous tissue.
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| Contributor(s) |
YA W |
| Citation(s) |
22905095 |
| Submission date |
Nov 17, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
qianru ai |
| E-mail(s) |
qrai@igenomics.com.cn
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| Organization name |
igenomic
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| Street address |
xingang xi road No135
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| City |
guangzhou |
| ZIP/Postal code |
510275 |
| Country |
China |
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| Platforms (1) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
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| Samples (3) |
| GSM835561 |
Colon tissue from human s1,normal |
| GSM835562 |
Colon tissue from human s2,paracancerous |
| GSM835563 |
Colon tissue from human s3,cancerous |
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| Relations |
| SRA |
SRP009386 |
| BioProject |
PRJNA148603 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE33782_RAW.tar |
12.5 Gb |
(http)(custom) |
TAR (of BAM) |
| GSE33782_gene_exp.diff.txt.gz |
5.1 Mb |
(ftp)(http) |
TXT |
| GSE33782_isoform_exp.diff.txt.gz |
17.3 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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