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Series GSE34099 Query DataSets for GSE34099
Status Public on Dec 01, 2012
Title Epigenome analysis of control and neurodevelopmental disorder lymphoblastoid cell lines
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling of control and neurodevelopmental disorder lymphoblastoid cell lines (LCL). The Illumina Infinium 27k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 27,000 CpGs in LCLs. Samples included 19 control, 18 Rett syndrome, 17 autism and 6 generalized epilepsy LCL samples. Six technical replicates were also included in the analysis.
 
Overall design Bisulphite converted DNA from the 60 samples and 5 technical replicates were hybridised to the Illumina Infinium 27k Human Methylation Beadchip v1.2
 
Contributor(s) Aldinger K, Aldinger KA
Citation(s) 23759142
Submission date Dec 02, 2011
Last update date Jan 02, 2015
Contact name Kimberly A Aldinger
E-mail(s) aldinger@usc.edu
Organization name University of Southern California
Department Zilkha Neurogenetic Institute
Street address 1501 San Pablo St.
City Los Angeles
ZIP/Postal code 90089
Country USA
 
Platforms (1)
GPL8490 Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2)
Samples (65)
GSM841769 GM11300 genomic DNA from LCL
GSM841770 GM11304 genomic DNA from LCL
GSM841771 GM11310 genomic DNA from LCL
Relations
BioProject PRJNA149905

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34099_RAW.tar 5.8 Mb (http)(custom) TAR
GSE34099_non-normalized.txt.gz 7.9 Mb (ftp)(http) TXT
Processed data included within Sample table
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