NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE34158 Query DataSets for GSE34158
Status Public on Jan 26, 2012
Title Expression data from peripheral blood - blood draws at Pre and Post time points of Allergen inhalation challenge (PAX.GR)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Detecting differential changes in the peripheral whole-blood transcriptome, post-challenge compared to pre-challenge; using globin reduced PAXgene (PAX.GR) tubes
 
Overall design Blood was collected immediately prior to, and two hours after challenge
Blood samples from 4 subjects were used to study the effects of globin reduction on differential gene expression
Preprocessing and filtering were applied to the PAX.GR dataset using the Factor Analysis for Robust MicroArray Summarization (farms) package in R
The Linear Models for MicroArrays (limma) package in R was used to determine differential gene expression using a Benjamini Hochberg FDR of 5%.
 
Contributor(s) Kam SH, Singh A, He J, Ruan J, Gauvreau GM, O'Byrne PM, FitzGerald JM, Tebbutt SJ
Citation(s) 22316092
Submission date Dec 05, 2011
Last update date Jul 26, 2018
Contact name Scott Tebbutt
E-mail(s) scott.tebbutt@hli.ubc.ca
Organization name University of British Columbia
Department Medicine
Lab James Hogg Research Centre
Street address Room 166, 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (8)
GSM843256 Subject 004 PAX.GR, biological rep1
GSM843257 Subject 004 PAX.GR, biological rep2
GSM843258 Subject 005 PAX.GR, biological rep1
This SubSeries is part of SuperSeries:
GSE34172 Expression data from peripheral blood - blood draws at Pre and Post time points of Allergen inhalation challenge
Relations
BioProject PRJNA156467

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34158_RAW.tar 31.8 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap