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Series GSE34630 Query DataSets for GSE34630
Status Public on Dec 28, 2013
Title Altered mucosal homeostasis in mice lacking secretory antibodies
Organism Mus musculus
Experiment type Expression profiling by array
Summary The mammalian gut is inhabited by a large and complex microbial community that lives in a mutualistic relationship with its host. Innate and adaptive mucosal defense mechanisms ensure a homeostatic relationship with this commensal microbiota. Secretory antibodies are generated from the active polymeric Ig receptor (pIgR)-mediated transport of IgA and IgM antibodies to the gut lumen and form the first line of adaptive immune defense of the intestinal mucosa. We probed mucosal homeostasis in pIgR knockout (KO) mice, which lack secretory antibodies. We found that in pIgR KO mice, colonic epithelial cells, the cell type most closely in contact with intestinal microbes, differentially expressed (>2-fold change) more than 200 genes compared with wild type mice, and upregulated the expression of anti-microbial peptides in a commensal-dependent manner. Detailed profiling of microbial communities based on 16S rRNA genes revealed differences in the commensal microbiota between pIgR KO and wild type mice. Furthermore, we found that pIgR KO mice showed increased susceptibility to dextran sulfate sodium (DSS)-induced colitis, and that this was driven by their conventional intestinal microbiota. In conclusion, secretory antibodies or the pIgR itself are required to maintain a stable commensal microbiota. In the absence of these humoral effector components, gut homeostasis is disturbed and the outcome of colitis significantly worsened.
 
Overall design 4 groups: wild type mice treated with antibiotic (5 replicates), wild type mice left untreated (5 replicates), pIgR KO mice treated with antibiotic (6 replicates), and pIgR KO mice left untreated (6 replicates).
 
Contributor(s) Reikvam DH, Erofeev A, Islam R, Derrien M, Grcic V, Sandvik A, Gaustad P, Meza-Zepeda LA, Jahnsen FL, Smidt H, Johansen FE
Citation(s) 22865203
Submission date Dec 21, 2011
Last update date Jan 16, 2019
Contact name Leonardo A. Meza-Zepeda
E-mail(s) leonardm@rr-research.no
Organization name The Norwegian Radium Hospital
Department Dept. of Tumor Biology
Street address Ullernchausseen 70
City Oslo
ZIP/Postal code N-0310
Country Norway
 
Platforms (1)
GPL6887 Illumina MouseWG-6 v2.0 expression beadchip
Samples (22)
GSM852173 Wild-type mice untreated, rep1
GSM852174 Wild-type mice untreated, rep2
GSM852175 Wild-type mice untreated, rep3
Relations
BioProject PRJNA151281

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34630_RAW.tar 15.8 Mb (http)(custom) TAR
GSE34630_non-normalized.txt.gz 6.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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