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Series GSE34651 Query DataSets for GSE34651
Status Public on Mar 22, 2016
Title Mechanisms of Pancreatic Acinar Cell Neoplasia Associated with Gene Expression Changes caused by Dietary Exposure of Rats to Ammonium perfluorooctanoate, Wyeth 14,643 or Diethylhexyl phthalate
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary To identify putative procarcinogenic gene changes associated with pancreatic acinar cell neoplasia in rats exposed to peroxisome proliferator activated receptor alpha agonists, we performed transcription profiling in the pancreas of rats fed diets containing the pancreatic carcinogen Wyeth 14,643 (Wy) at procarcinogenic (50ppm) and non-carcinogenic (20ppm) doses for 1, 7, 28 and 90 days. The effects of these treatments were compared to those of ammonium perfluorooctanoate (APFO) 300 ppm, an agent shown to induce pancreatic acinar cell adenomas in rats, and diethylhexylphthalate (DEHP) 12,000 ppm, an agent not shown to produce pancreatic acinar cell tumors.
To assess whether this putative mechanism(s) of carcinogenesis occurs in ‘target’ cells we have also performed transcriptional profiling in isolated pancreatic acinar cells obtained from animals exposed to these compounds in vivo.
 
Overall design Treatment-induced changes in gene expression were assessed in the pancreas by two-colour hybridisation of fluorescently labelled (Cy5/Cy3) cRNAs from three separate animals for each treatment against cRNA generated from a common ‘reference’ (control) made by pooling pancreatic RNA samples extracted from control (vehicle-treated) animals. Two hybridisations were performed in duplicate in order to incorporate a ‘dye swap’. Hence, there were 5 arrays per treatment group.
 
Contributor(s) Plummer SM, Elcombe CR
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Submission date Dec 22, 2011
Last update date Mar 22, 2016
Contact name Simon Plummer
E-mail(s) simonplummer@micromatrices.com
Phone +44(0)1382542088
Organization name Micromatrices Associates ltd
Street address 23 Wellgate Street
City Newort on tay
ZIP/Postal code DD68HS
Country United Kingdom
 
Platforms (2)
GPL890 Agilent-011868 Rat Oligo Microarray G4130A (Feature Number version)
GPL2877 Agilent-013162 Whole Rat Genome Microarray G4131A (Feature Number version)
Samples (109)
GSM852669 control vs APFO 1day rep 1
GSM852670 control vs APFO 1day rep 2
GSM852671 control vs APFO 1day rep 3
Relations
BioProject PRJNA151251

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34651_APFO_DAY_7_Signature.txt.gz 189.9 Kb (ftp)(http) TXT
GSE34651_APFO_DAY_90_Signature.txt.gz 252.4 Kb (ftp)(http) TXT
GSE34651_APFO_acinar_1_day_sig.txt.gz 91.0 Kb (ftp)(http) TXT
GSE34651_APFO_acinar_28_day_sig.txt.gz 405.1 Kb (ftp)(http) TXT
GSE34651_APFO_acinar_7_day_sig.txt.gz 53.4 Kb (ftp)(http) TXT
GSE34651_DEHP_DAY_1_Signature.txt.gz 129.0 Kb (ftp)(http) TXT
GSE34651_DEHP_DAY_28_Signature.txt.gz 232.4 Kb (ftp)(http) TXT
GSE34651_DEHP_DAY_7_Signature.txt.gz 103.8 Kb (ftp)(http) TXT
GSE34651_DEHP_DAY_90_Signature.txt.gz 178.4 Kb (ftp)(http) TXT
GSE34651_RAW.tar 548.6 Mb (http)(custom) TAR (of TXT)
GSE34651_WY-20_DAY_1_Signature.txt.gz 177.4 Kb (ftp)(http) TXT
GSE34651_WY-20_DAY_28_Signature.txt.gz 326.4 Kb (ftp)(http) TXT
GSE34651_WY-20_DAY_7_Signature.txt.gz 85.0 Kb (ftp)(http) TXT
GSE34651_WY-20_DAY_90_Signature.txt.gz 75.9 Kb (ftp)(http) TXT
GSE34651_WY-50_1_DAY_Signature.txt.gz 86.1 Kb (ftp)(http) TXT
GSE34651_WY-50_DAY_28_Signature.txt.gz 239.9 Kb (ftp)(http) TXT
GSE34651_WY-50_DAY_7_Signature.txt.gz 120.5 Kb (ftp)(http) TXT
GSE34651_WY-50_DAY_90_Signature.txt.gz 238.1 Kb (ftp)(http) TXT
GSE34651_Wy50ppm_acinar_1_day_sig.txt.gz 63.7 Kb (ftp)(http) TXT
GSE34651_Wy50ppm_acinar_28_day_sig.txt.gz 404.5 Kb (ftp)(http) TXT
GSE34651_Wy50ppm_acinar_7_day_sig.txt.gz 155.3 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record
Processed data provided as supplementary file

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