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| Status |
Public on Jun 08, 2012 |
| Title |
Deep Sequence Analysis of non-small cell lung cancer: Integrated analysis of gene expression, alternative splicing, and single nucleotide variations in lung adenocarcinomas with and without oncogenic KRAS mutations |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
In this manuscript, we have used RNA-Sequencing experiment to obtain and integrate a variety of genomic features in order to identify signaling pathways that are associated to mutant KRAS lung tumors.
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| Overall design |
8 lung adenocarcinomas with mutant KRAS in lung tumors and 8 lung adenocarcarcinomas without KRAS mutation of which one sample is ran twice for QC purposes.
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| Contributor(s) |
Kalari KR, Rossell D, Necela BM, Asmann YW, Nair A, Baheti S, Kachergus JM, Younkin CS, Baker TR, Carr JM, Tang X, Walsh MP, Chai H, Sun Z, Hart SN, Leontovich AA, Hossain A, Kocher J, Perez EA, Reisman DN, Fields AP, Thompson EA |
| Citation(s) |
22655260 |
| Submission date |
Jan 06, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Krishna R Kalari |
| E-mail(s) |
kalari.krishna@mayo.edu
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| Organization name |
Mayo Clinic
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| Department |
Department of Biomedical Statistics and Informatics
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| Lab |
Dr Thompson-CancerBiology
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| Street address |
200 1st ST SW
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| City |
Rochester |
| State/province |
MN |
| ZIP/Postal code |
55901 |
| Country |
USA |
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| Platforms (1) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
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| Samples (16)
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| Relations |
| SRA |
SRP010166 |
| BioProject |
PRJNA150161 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE34914_RAW.tar |
2.2 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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