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Series GSE35295 Query DataSets for GSE35295
Status Public on Jan 04, 2013
Title Human induced pluripotent stem cell-technology to study the effects of human cytomegalovirus infection on neural differentiation
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Congenital human cytomegalovirus (HCMV) infection is one of the leading prenatal causes of mental retardation and congenital deformities world-wide. Access to cultured human neuronal lineages, necessary to understand the species specific pathogenic effects of HCMV has been limited by difficulties in sustaining primary cultures. Neuronal cells derived from human induced pluripotent stem (iPS) cells now provide a novel opportunity to investigate HCMV pathogenesis. We derived iPS cells from human adult fibroblasts and induced neural lineages to investigate their permissiveness to infection with HCMV strain Ad169. Analysis of iPS cells and nearly pure populations of iPS-derived neural stem cells (NSCs), neuroprogenitor cells (NPCs) and neurons suggests that (i) iPS cells are not permissive to HCMV infection; (ii) Neural stem cells have impaired differentiation when infected by HCMV; (iii) NPCs are fully permissive for HCMV infection; the supernatant from infected neural stem cells and NPCs (but not mock infected cells) induced cytopathic effects in human fibroblasts; (iv) most iPS-derived neurons are not permissive to HCMV infection; and (v) infected neurons have impaired calcium influx in response to glutamate. Our approach offers powerful cellular models to investigate the effect of neurotropic viral agents on human neurodevelopment.
 
Overall design Adherent monolayer culture of neural progenitor cells (NPCs) were either infected with HCMV Ad169 in triplicate, with each individual sample harvested separately to provide biological replicates for expression analysis. Infected and mock-infected cells were harvested 24 h p.i. RNA.
NPCs were 70-80% confluence.
 
Contributor(s) Miller J, Nimgaonkar V, D'Aiuto L
Citation(s) 23209593
Submission date Jan 24, 2012
Last update date Aug 13, 2018
Contact name Leonardo D'Aiuto
E-mail(s) daiutol@upmc.edu
Phone 4126570558
Organization name UPMC
Street address 3811 O’Hara Street
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (6)
GSM865285 Neural progenitor cells biological rep 1
GSM865286 Neural progenitor cells biological rep 2
GSM865287 Neural progenitor cells biological rep 3
Relations
BioProject PRJNA151599

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE35295_HCMV_table.txt.gz 3.2 Kb (ftp)(http) TXT
GSE35295_RAW.tar 26.2 Mb (http)(custom) TAR
GSE35295_non-normalized.txt.gz 12.8 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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