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GEO accession:
Series GSE35877
Query DataSets for GSE35877
Status
Public on Mar 19, 2015
Title
Genome wide binding and expression profiling defines a Bapx1-Sox9 axis in vertebral column, Gut, Spleen and limbs in developing mouse embryo.
Organism
Mus musculus
Experiment type
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
25480362
,
27672560
Submission date
Feb 16, 2012
Last update date
Jul 15, 2019
Contact name
Thomas Lufkin
E-mail(s)
tlufkin@clarkson.edu
Organization name
Clarkson University
Department
Biology
Lab
Stem Cells & Regenerative Medicine
Street address
8 Clarkson Avenue
City
Potsdam
State/province
NY
ZIP/Postal code
13699
Country
USA
Platforms (3)
GPL6568
Illumina mouse-6 v1.1 expression beadchips
GPL6887
Illumina MouseWG-6 v2.0 expression beadchip
GPL9250
Illumina Genome Analyzer II (Mus musculus)
Samples (54)
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GSM872912
WTBapx1 FL Cells-Rep1
GSM872913
WTBapx1 FL Cells-Rep2
GSM872914
WTBapx1 FL Cells-Rep3
GSM872915
WTBapx1 FL Cells-Rep4
GSM872916
HomoBapx1 FL Cells-Rep1
GSM872917
HomoBapx1 FL Cells-Rep2
GSM872918
HomoBapx1 FL Cells-Rep3
GSM872919
HomoBapx1 FL Cells-Rep4
GSM872920
WTBapx1 gut Cells-Rep1
GSM872921
WTBapx1 gut Cells-Rep2
GSM872922
WTBapx1 gut Cells-Rep3
GSM872923
WTBapx1 gut Cells-Rep4
GSM872924
HomoBapx1 gut Cells-Rep1
GSM872925
HomoBapx1 gut Cells-Rep2
GSM872926
HomoBapx1 gut Cells-Rep3
GSM872927
HomoBapx1 gut Cells-Rep4
GSM872956
WTBapx1 HL Cells-Rep1
GSM872957
WTBapx1 HL Cells-Rep2
GSM872958
WTBapx1 HL Cells-Rep3
GSM872959
WTBapx1 HL Cells-Rep4
GSM872960
HomoBapx1 HL Cells-Rep1
GSM872961
HomoBapx1 HL Cells-Rep2
GSM872962
HomoBapx1 HL Cells-Rep3
GSM872963
HomoBapx1 HL Cells-Rep4
GSM872997
WTBapx1 Spleen Cells-Rep1
GSM872998
WTBapx1 SpleenCells-Rep2
GSM872999
WTBapx1 SpleenCells-Rep3
GSM873000
WTBapx1 Spleen Cells-Rep4
GSM873001
HomoBapx1 SpleenCells-Rep1
GSM873002
HomoBapx1 Spleen Cells-Rep2
GSM873003
HomoBapx1 Spleen Cells-Rep3
GSM873004
HomoBapx1 Spleen Cells-Rep4
GSM873005
WTBapx1 Vertebral Column Cells-Rep1
GSM873006
WTBapx1 Vertebral Column Cells-Rep2
GSM873007
WTBapx1 Vertebral Column Cells-Rep3
GSM873008
WTBapx1 Vertebral Column Cells-Rep4
GSM873009
HomoBapx1 Vertebral Column Cells-Rep1
GSM873010
HomoBapx1 Vertebral Column Cells-Rep2
GSM873011
HomoBapx1 Vertebral Column Cells-Rep3
GSM873012
HomoBapx1 Vertebral Column Cells-Rep4
GSM877197
WT Sox9 Vertebral Column Cells-Rep1
GSM877198
WT Sox9 Vertebral Column Cells-Rep2
GSM877199
WT Sox9 Vertebral Column Cells-Rep3
GSM877200
WT Sox9 Vertebral Column Cells-Rep4
GSM877201
Homo Sox9 Vertebral Column Cells-Rep1
GSM877202
Homo Sox9 Vertebral Column Cells-Rep2
GSM877203
Homo Sox9 Vertebral Column Cells-Rep3
GSM877204
Homo Sox9 Vertebral Column Cells-Rep4
GSM898364
ChIP-seq_Bapx1_VC
GSM898365
Input l_VC
GSM898366
ChIP-seq_Sox9_VC
GSM898367
Input_ VC
GSM898368
ChIP-seq_Bapx1_ 3T3
GSM898369
Input_ 3T3
This SuperSeries is composed of the following SubSeries:
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GSE35649
Gene Expression profiles of Bapx1 sorted cells from forelimbs (FL) of wildtype (WT) and Bapx1 null (HOMO) E12.5 mouse embryos
GSE35650
Gene Expression profiles of Bapx1 sorted cells from gut of wildtype (WT) and Bapx1 null (HOMO) E12.5 mouse embryos
GSE35652
Gene Expression profiles of Bapx1 sorted cells from hindlimbs (HL) of wildtype (WT) and Bapx1 null (HOMO) E12.5 mouse embryos
GSE35654
Gene Expression profiles of Bapx1 sorted cells from spleen of wildtype (WT) and BApx1 null (HOMO) E12.5 mouse embryos
GSE35655
Gene Expression profiles of Bapx1 sorted cells from vertebral column of wildtype (WT) and Bapx1 null (HOMO) E12.5 mouse embryos
GSE35898
Gene Expression profile of Sox9 sorted cells from Vertebral column of E12.5 wildtype (WT) and Homozygous (HOMO) mouse embryos
GSE36672
In vivo and in vitro Genome wide binding (ChIP-Seq) of Bapx1 and Sox9
Relations
BioProject
PRJNA151933
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Format
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TXT
Supplementary file
Size
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File type/resource
GSE35877_RAW.tar
724.6 Mb
(http)
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TAR (of TXT, WIG)
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