NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE35974 Query DataSets for GSE35974
Status Public on Dec 31, 2012
Title Expression data from the human cerebellum brain
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Schizophrenia (SCZ) and bipolar disorder (BD) are highly heritable psychiatric disorders. Associated genetic and gene expression
changes have been identified, but many have not been replicated and have unknown functions. We identified groups of genes
whose expressions varied together, that is co-expression modules, then tested them for association with SCZ. Using weighted gene
co-expression network analysis, we show that two modules were differentially expressed in patients versus controls. One,
upregulated in cerebral cortex, was enriched with neuron differentiation and neuron development genes, as well as disease
genome-wide association study genetic signals; the second, altered in cerebral cortex and cerebellum, was enriched with genes
involved in neuron protection functions. The findings were preserved in five expression data sets, including sets from three brain
regions, from a different microarray platform, and from BD patients. From those observations, we propose neuron differentiation
and development pathways may be involved in etiologies of both SCZ and BD, and neuron protection function participates in
pathological process of the diseases.
 
Overall design We use microarray technology to understand the etiology and pathology of psychiatric diseases at the transcriptomic level. Postmortem human brain samples came from the Stanley Medical Research Institute’s Neuropathology Consortium and Array collections, including schizophrenia, bipolar disorder and control samples.
 
Contributor(s) Liu C, Chen C
Citation(s) 23147385
Submission date Feb 21, 2012
Last update date Jan 08, 2019
Contact name Chao Chen
Organization name Central South University
Street address 110 Xiangya Road
City Changsha
ZIP/Postal code 410078
Country China
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (144)
GSM878214 CC1_100909
GSM878215 CC2_100909
GSM878216 CC3_100909
This SubSeries is part of SuperSeries:
GSE35978 Expression data from the human cerebellum and parietal cortex brain
Relations
BioProject PRJNA155747

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE35974_RAW.tar 615.5 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap