|
| Status |
Public on Mar 13, 2012 |
| Title |
Small RNA sequencing of melanoma samples to deduce microRNA expression profiles |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We report results on microRNA profiles revealing the distribution of "isomirs" of microRNA in a cancerous state. Deep sequencing was conducted at Stanford University and data analysis was conducted at the University of Connecticut Health Center.
|
| |
|
| Overall design |
Small RNA profiling to deduce differential microRNA expression levels along various stages of melanoma. Deep sequencing was performed on formalin-fixed paraffin-embedded (FFPE) archived tissue samples, fresh frozen samples from melanomas, and cell lines.
|
| |
|
| Contributor(s) |
Dadras S, Kozubek J, Fleming E |
| Citation(s) |
25237911 |
| Submission date |
Mar 02, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Sam Dadras |
| E-mail(s) |
dadras@uchc.edu
|
| Phone |
860-679-6286
|
| Fax |
860-679-1267
|
| Organization name |
UCONN Health Center
|
| Department |
Genetics and Cell Biology
|
| Lab |
Dadras Lab
|
| Street address |
Cell and Genome Science Building, 400 Farmington Ave.
|
| City |
Farmington |
| State/province |
CT |
| ZIP/Postal code |
06032 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9052 |
Illumina Genome Analyzer (Homo sapiens) |
|
| Samples (31)
|
| GSM893564 |
Metastatic Melanoma to Lymph Node1 |
| GSM893565 |
Acrolentiginous melanoma (3.0 mm, level IV) |
| GSM893566 |
Metastatic Melanoma to the Lymph Node2 |
|
| Relations |
| SRA |
SRP011422 |
| BioProject |
PRJNA153151 |
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