NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE37020 Query DataSets for GSE37020
Status Public on Mar 30, 2013
Title Epigenome analysis of smear cells from the uterine cervix consisting of 24 normals and 24 cervical intraepithelial neoplasias (all HPV+)
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary The Illumina Infinium 27k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 27,000 CpGs in smear cells from the uterine cervix (liquid based cytology samples), obtained from 48 women. All women tested positive for the human papilloma virus (HPV+). Of the 48 samples, 24 were cytologically normal while the other 24 exhibited morphological transformation (cervical intraepithelial neoplasia of grade 2 or higher - CIN2+).
 
Overall design Bisulphite converted DNA from the 48 samples were hybridised to the Illumina Infinium 27k Human Methylation Beadchip v1.2
 
Contributor(s) Teschendorff A, Widschwendter M
Citation(s) 22492641, 27103033
Submission date Apr 03, 2012
Last update date Oct 04, 2019
Contact name Andrew E Teschendorff
E-mail(s) a.teschendorff@ucl.ac.uk
Phone +44 02076790727
Organization name University College London
Department UCL Cancer Institute/Institute for Women's Health
Street address 72 Huntley Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
 
Platforms (1)
GPL8490 Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2)
Samples (48)
GSM908639 HPV+ve/Cyto+ve Liquid Based Cytology Cervical Smear Sample LBC25
GSM908640 HPV+ve/Cyto-ve Liquid Based Cytology Cervical Smear Sample LBC07
GSM908641 HPV+ve/Cyto+ve Liquid Based Cytology Cervical Smear Sample LBC45
Relations
BioProject PRJNA157499

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE37020_RAW.tar 26.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap