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Series GSE37178 Query DataSets for GSE37178
Status Public on Feb 01, 2013
Title Time course analysis of colon cancer samples (part 2)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The study outcome was to evaluate the effect of the time on tumor samples and possibly select specific genes whose expression is time-related, that could be used as detectors of tissue degradation.
 
Overall design RNA extracted from specimens of 14 patients at four time points after surgery was analyzed for gene expression on high-density oligonucleotide microarrays. A mixed-effects model implemented by considering the factor time (T0, T1, T2, T3) as fixed and the factor patient as random was used to identify probes with different expression means across the four different time points. The p-values of the model were adjusted with the Bonferroni method (p<0. 05).
 
Contributor(s) Pierotti MA, Daidone MG
Citation(s) 23308215
Submission date Apr 11, 2012
Last update date Aug 16, 2018
Contact name Maurizio Callari
E-mail(s) maurizio.callari@cruk.cam.ac.uk
Organization name Fondazione IRCCS Istituto Nazionale dei Tumori
Street address Via Amadeo, 42
City Milan
ZIP/Postal code 20133
Country Italy
 
Platforms (1)
GPL6947 Illumina HumanHT-12 V3.0 expression beadchip
Samples (84)
GSM913048 Colorectal cancer tissue patient 09/1601 T0 A CL145
GSM913049 Colorectal cancer tissue patient 09/1601 T0 B CL146
GSM913050 Colorectal cancer tissue patient 09/1601 T0 C CL147
This SubSeries is part of SuperSeries:
GSE37182 Time course analysis of colon cancer samples
Relations
BioProject PRJNA158651

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE37178_RAW.tar 6.2 Mb (http)(custom) TAR
GSE37178_non-normalized.txt.gz 17.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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