|
| Status |
Public on Mar 01, 2013 |
| Title |
CDK8 ChIP-seq from HCT116 cells in normoxia and hypoxia |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
To test if CDK8 acts directly at HIF1A target genes, we performed ChIP-seq experiments in HCT116 cells under normoxic and hypoxic conditions.
|
| |
|
| Overall design |
ChIP-seq for CDK8 versus Input under normoxia and 24hrs hypoxia (1% O2).
|
| |
|
| Contributor(s) |
Galbraith M |
| Citation(s) |
23746844 |
| Submission date |
May 25, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Matthew D Galbraith |
| Organization name |
University of Colorado Anschutz Medical Campus
|
| Department |
Pharmacology & Linda Crnic Institute for Down Syndrome
|
| Street address |
RC1-N, Mail Stop 8303, Rm. P18-6114 12800 E. 19th Ave.
|
| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (4)
|
| GSM937563 |
CDK8-ChIP enriched DNA, hypoxia, replicate2 |
|
| Relations |
| SRA |
SRP013394 |
| BioProject |
PRJNA167526 |
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