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GEO accession:
Series GSE38266
Query DataSets for GSE38266
Status
Public on Nov 30, 2012
Title
450k Analysis of 42 FFPE HPV+ and HPV- HNSCC samples
Organism
Homo sapiens
Experiment type
Methylation profiling by array
Summary
The methylation analysis of 21 FFPE HPV+ HNSCC samples and 21 FPPE HPV- HNSCC samples by Infinium HumanMethylation450 BeadChip
Overall design
Analysis of 42 450k methylation profiles, comprising 21 HPV+ HNSCC samples and 21 HPV- HNSCC samples
Contributor(s)
Lechner M
,
Fenton T
,
West J
,
Wilson G
,
Feber A
,
Thirlwell C
,
Dibra HK
,
Jay A
,
Butcher L
,
Gratrix F
,
Patel N
,
Vaz F
,
O'Flynn P
,
Kalavrezos N
,
Teschendorff AE
,
Boshoff C
,
Beck S
Citation(s)
23419152
,
25538261
,
23718828
Submission date
May 25, 2012
Last update date
Feb 03, 2020
Contact name
Matthias Lechner
E-mail(s)
m.lechner@ucl.ac.uk
Organization name
University College London
Department
UCL Cancer Institute
Lab
Medical Genomics
Street address
Gower Street
City
London
ZIP/Postal code
WC1E 6BT
Country
United Kingdom
Platforms (1)
GPL13534
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (42)
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GSM937714
HPV- HNSCC sample FFPE 3
GSM937715
HPV+ HNSCC sample FFPE 6
GSM937716
HPV- HNSCC sample FFPE 7
GSM937717
HPV+ HNSCC sample FFPE 8
GSM937718
HPV- HNSCC sample FFPE 9
GSM937719
HPV- HNSCC sample FFPE 10
GSM937720
HPV- HNSCC sample FFPE 11
GSM937721
HPV- HNSCC sample FFPE 12
GSM937722
HPV+ HNSCC sample FFPE 13
GSM937723
HPV- HNSCC sample FFPE 14
GSM937724
HPV+ HNSCC sample FFPE 16
GSM937725
HPV- HNSCC sample FFPE 17
GSM937726
HPV+ HNSCC sample FFPE 19
GSM937727
HPV- HNSCC sample FFPE 24
GSM937728
HPV- HNSCC sample FFPE 25
GSM937729
HPV+ HNSCC sample FFPE 26
GSM937730
HPV+ HNSCC sample FFPE 28
GSM937731
HPV- HNSCC sample FFPE 29
GSM937732
HPV- HNSCC sample FFPE 30
GSM937733
HPV+ HNSCC sample FFPE 35
GSM937734
HPV- HNSCC sample FFPE 36
GSM937735
HPV+ HNSCC sample FFPE 37
GSM937736
HPV+ HNSCC sample FFPE 38
GSM937737
HPV- HNSCC sample FFPE 41
GSM937738
HPV- HNSCC sample FFPE 40
GSM937739
HPV- HNSCC sample FFPE 42
GSM937740
HPV+ HNSCC sample FFPE 43
GSM937741
HPV+ HNSCC sample FFPE 47
GSM937742
HPV+ HNSCC sample FFPE 48
GSM937743
HPV+ HNSCC sample FFPE 50
GSM937744
HPV+ HNSCC sample FFPE 60
GSM937745
HPV- HNSCC sample FFPE 62
GSM937746
HPV+ HNSCC sample FFPE 67
GSM937747
HPV+ HNSCC sample FFPE 72
GSM937748
HPV+ HNSCC sample FFPE 74
GSM937749
HPV+ HNSCC sample FFPE 79
GSM937750
HPV+ HNSCC sample FFPE 82
GSM937751
HPV+ HNSCC sample FFPE 83
GSM937752
HPV- HNSCC sample FFPE 90
GSM937753
HPV- HNSCC sample FFPE 91
GSM937754
HPV- HNSCC sample FFPE 92
GSM937755
HPV- HNSCC sample FFPE 94
This SubSeries is part of SuperSeries:
GSE38271
FF and FFPE HPV+ and HPV- HNSCC and HNSCC cell lines
Relations
BioProject
PRJNA167711
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE38266_Matrix_processed_HNSCC_FFPE42.csv.gz
95.4 Mb
(ftp)
(http)
CSV
GSE38266_Matrix_signal_intensities_HNSCC_FFPE42.csv.gz
101.3 Mb
(ftp)
(http)
CSV
GSE38266_RAW.tar
183.1 Mb
(http)
(custom)
TAR
Processed data included within Sample table
Processed data are available on Series record
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